Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b20
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    43   2e-04
Z99281-17|CAB54456.2|  177|Caenorhabditis elegans Hypothetical p...    33   0.19 
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    31   0.78 
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   5.5  
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    28   5.5  
Z66500-7|CAA91311.1|  182|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF078787-10|AAC26956.1|  352|Caenorhabditis elegans Hypothetical...    28   7.2  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    27   9.6  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    27   9.6  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    27   9.6  
L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 8/195 (4%)
 Frame = +2

Query: 74  IAKYVLFIANLVFSLAGLAIIRLGVAVLRNLRDLQDILPVN--ALPXXXXXXXXXXXXXX 247
           I KY+LF+ANLV  + GL++I +G  +     ++ DIL     A P              
Sbjct: 8   IVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLATPILLLVIGSLCTLLG 67

Query: 248 XXXXXXXXKESRCMLITYSIFMVILVAVKIYLAIVVF----GFLSDVTSTITSWVTTAFN 415
                   +E+ C+ +++++ + +L+  +I   I+ +     F   + + + + +     
Sbjct: 68  FLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHE 127

Query: 416 TSSLRDVYHVMEALFNCCGTTGPSSYDGILSQLPPSCCASPVDNTF--YAPNAFPGCTTR 589
           +  +   +     LF CCG T  S +    + +P SCC   ++      AP   PGC   
Sbjct: 128 SRGVESAWDKTHQLFECCGVTNSSDW-LTFTTIPDSCCIEEIEGCARENAPLFEPGCIHS 186

Query: 590 LIDYFDTFGRAIGSV 634
           +  +    G  +G +
Sbjct: 187 VEQWVLKNGAMVGGI 201


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 27/101 (26%), Positives = 46/101 (45%)
 Frame = +2

Query: 278 SRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEAL 457
           S+ +L  Y +FMVIL  ++I + I V      V  T+  +V  +FN ++  D+       
Sbjct: 96  SKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSFNMNAQADI-SAFNFR 154

Query: 458 FNCCGTTGPSSYDGILSQLPPSCCASPVDNTFYAPNAFPGC 580
           +NCCG     + +    Q  P+C ++  D   +    F  C
Sbjct: 155 YNCCGAENLPNLNCFAGQ--PTCSSAVWDRLDFTMMIFGIC 193


>Z99281-17|CAB54456.2|  177|Caenorhabditis elegans Hypothetical
           protein Y57G11C.33 protein.
          Length = 177

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +1

Query: 115 VGRSSYYTSWSGRLKKSTGSSRYSTSQRFANRDNRPRMHHIHHCIPSVLWSDKGIKMYAD 294
           +G  + Y S++  + KST   +    Q F NR+NR   HH+   I + +  ++G+++   
Sbjct: 98  LGCFTCYASYA--ITKSTYRRKLDELQEFLNRENREIYHHVGFHIRNPM--ERGLRVLEI 153

Query: 295 NLLHIHGDTGGRE-DLPG 345
           +LL   G+T   + D PG
Sbjct: 154 SLLSRQGETPRDDVDSPG 171


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 275 ESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEA 454
           ES  +L  +   +VIL AV++   +       +  S+I   +  +  T  LR     ++ 
Sbjct: 92  ESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKSSATYELRKNIKPIQN 151

Query: 455 LFNCCGTTGPSSYDGILSQL-PPSCCASPVD 544
           +F CCG T  +    I   L  P   ++PV+
Sbjct: 152 VFQCCGATAQTQNRYIQDGLCGPEPLSAPVN 182


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +2

Query: 278 SRCMLITYS--IFMVILVAVK--IYLAIVVFGFLSDVTSTITSWVTTAFNTSSL-RDVYH 442
           SR  LI YS  +F++++  +   IYL     G   +++  +   V   +    + ++   
Sbjct: 139 SRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMVQHYYQGPGVVQESLD 198

Query: 443 VMEALFNCCGTTGPSSYDGILSQLPPSC 526
            ++  F CCG  G S +      +P SC
Sbjct: 199 HLQTAFRCCGNAGCSDFRVFRQDIPRSC 226



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 77  AKYVLFIANLVFSLAGLAIIRLGV 148
           AKY +F AN+VF + G  ++ +GV
Sbjct: 57  AKYGIFTANIVFLIVGGLLLAMGV 80


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
 Frame = +2

Query: 371 DVTSTITSWVTTAFNTSSLRDV---YHVMEALFNCCGTTGPSSYDGILSQLPPSCCASPV 541
           D  ST TSW    F TSS            A  + C ++  SS     +    SC  S  
Sbjct: 133 DSFSTCTSWAANGFCTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTDSAS 192

Query: 542 DNTFYAPNAFPGCT 583
             + +A N F  CT
Sbjct: 193 SCSSWAANGF--CT 204


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 56  MCCPEFIAKYVLFIANLVFSLAGLAIIRLGV 148
           + C     K+ LFI NLVF L GL  + +G+
Sbjct: 11  LSCTARALKFSLFIFNLVFLLCGLICLGIGL 41


>Z66500-7|CAA91311.1|  182|Caenorhabditis elegans Hypothetical
           protein T05C12.9 protein.
          Length = 182

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
 Frame = +2

Query: 299 YSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDV----------YHVM 448
           Y + M + + + +   + V GF   V  +I S    +F    L+ +           H  
Sbjct: 71  YRLAMTVTLGISVISLVTVIGFTIAVYQSIGSTSEESFQQEFLKVLEQKSEKGMRTLHKF 130

Query: 449 EALFNCCGTTGPSSYDGILSQLPPSCCASPVDNTFY 556
           + +  CCG   P+S     S + PS   SP  + FY
Sbjct: 131 QKITECCGVPLPTSTGWNQSSITPS---SPWTSWFY 163


>AF078787-10|AAC26956.1|  352|Caenorhabditis elegans Hypothetical
           protein T17A3.10 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 423 LLVLNAVVTQLVIVLVTSDRKPNTTI 346
           +++LNA+V    +  VT+D+ PNT I
Sbjct: 2   IILLNALVISFFLKFVTTDQTPNTQI 27


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 305 IFMVILVAVKIYLAIVVFGFLSDVTSTITSWV 400
           IF+VIL  +K  +      F S+ T  I SW+
Sbjct: 237 IFLVILTLIKAIIIACGLSFKSESTDEILSWI 268


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 305 IFMVILVAVKIYLAIVVFGFLSDVTSTITSWV 400
           IF+VIL  +K  +      F S+ T  I SW+
Sbjct: 237 IFLVILTLIKAIIIACGLSFKSESTDEILSWI 268


>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 328 REDLPGYRGIRFSVRRHQHNNQLGDHSVQHEQLKRR 435
           +E LP     R       HN QL DHSV H ++  R
Sbjct: 203 KETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTR 238


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 475 CSTAIE*SFHDVIYVS*AARVERCGHPAGYCAGDVGQKTEYHDSQVDLHGHQY 317
           C T  E  FH  IY S     +   H  GYC   V     +HDS++  H + Y
Sbjct: 265 CHTRTEQQFHPEIYKSTKCN-DMLEH--GYCPRAVFCAFAHHDSELHAHRNPY 314


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 GHPAGYCAGDVGQKTEYHDSQVDLHGHQY-HHEYGVGYQH 287
           GH   +   D G    + D   D HGH + H+E+  G+ H
Sbjct: 360 GHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSH 399


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 GHPAGYCAGDVGQKTEYHDSQVDLHGHQY-HHEYGVGYQH 287
           GH   +   D G    + D   D HGH + H+E+  G+ H
Sbjct: 378 GHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDHGHSH 417


>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 262 WSDKGIKMYADNLLHIHGDTGGREDLPGYR---GIRFSVRRHQHNNQLGDHSVQH 417
           W +K  +   D LL ++   GG ++  G     G+R + RR  + ++  D  V H
Sbjct: 50  WDEKAARQRTDMLLAMNEGAGGSDERRGANVAGGMRRNARRRVNRDEQEDGFVNH 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,287
Number of Sequences: 27780
Number of extensions: 330526
Number of successful extensions: 1065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)