Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b20
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    32   0.41 
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    30   1.3  
At1g52190.1 68414.m05889 proton-dependent oligopeptide transport...    29   3.8  
At5g14490.1 68418.m01696 no apical meristem (NAM) family protein...    28   6.7  
At3g14580.1 68416.m01846 pentatricopeptide (PPR) repeat-containi...    28   6.7  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   6.7  
At5g66540.1 68418.m08389 expressed protein ; supported by full-L...    27   8.9  
At2g45600.1 68415.m05670 expressed protein low similarity to PrM...    27   8.9  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    27   8.9  

>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 322 GGREDLPGYRGIRFSVRRHQHNNQLGDHSVQHEQLKRRISRHGSSIQL 465
           GG+E   G+ G+R S+ R    + +G+  V  E  + ++SR G S  L
Sbjct: 681 GGKETQSGHVGVRPSIPRKFQYHPMGNIDVTDEPCRGKVSRFGQSQSL 728


>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 290 LITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEALFNCC 469
           L+  ++  V+++A  I LA+ ++G     T  + +   ++ NTSS  D    +   FN  
Sbjct: 102 LLLPALSAVLVIATVIGLALFLYGRHRGQTRHLKNSHCSSSNTSSYGDEQSHITTNFNMA 161

Query: 470 GTTGPS 487
            TT PS
Sbjct: 162 ATTSPS 167


>At1g52190.1 68414.m05889 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 607

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 352 GIRFSVRRHQHNNQLGDHSVQHEQLKRRISRHGSSIQL 465
           GI  S+   Q + QL    +Q   + RR+SRHGSS Q+
Sbjct: 341 GIMMSINTSQSSFQL----LQATSMDRRLSRHGSSFQV 374


>At5g14490.1 68418.m01696 no apical meristem (NAM) family protein
           similar to CUC2 (GI:1944132) [Arabidopsis thaliana];
          Length = 350

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 670 DRDELKKYDNDQNAADGPTEGIEVINQ-SSGAAGERVGGIEGVVN 539
           D DE+   D+ +   D   EG+E I + SSG+  +++  + G V+
Sbjct: 256 DEDEIAFDDDSKMVLDSYAEGLENIQEASSGSTSDKIAKVGGNVS 300


>At3g14580.1 68416.m01846 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 405

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 121 RSSYYTSWSGRLKKSTGSSRY-STSQRFANRDNRPRMHH 234
           RS   +S   R+  S+ S RY S+SQR++  D   R+ H
Sbjct: 18  RSQSLSSSGVRILSSSSSDRYTSSSQRYSGDDRLARLRH 56


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 364 KTEYHDSQVDLHGHQYHHEYGVGYQH 287
           K E H    D H H+ HH++   ++H
Sbjct: 566 KNEEHHQHSDSHKHEEHHQHSDSHKH 591



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 364 KTEYHDSQVDLHGHQYHHEYGVGYQHTS*FLYRSTAR*ECNDEYDASEDDYPY 206
           K E H    D H H+ HHE+   + H S     S    ECN  +D     + +
Sbjct: 578 KHEEHHQHSDSHKHEEHHEH--DHHHHS----HSHKHEECNHNHDHEHQSHSH 624


>At5g66540.1 68418.m08389 expressed protein ; supported by
           full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
          Length = 524

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 688 QEPSEDDRDELKKYDNDQNAADGPTEGIE 602
           +E  ED+ +E ++ + ++   DG  EGIE
Sbjct: 142 EEEEEDEEEEEEEEEEEEEEKDGDNEGIE 170


>At2g45600.1 68415.m05670 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 329

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 FNTSSLRDVYHVMEALFNCCGTTGPSS 490
           F+ +  + +Y  +EA    C +TGPSS
Sbjct: 299 FDGNKAKALYETVEAFMKSCSSTGPSS 325


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
 Frame = +1

Query: 169  GSSRYSTSQRFANRDNRPRMHHIHHCIPSVLWSDKGIKMYADN-LLHIHGDTGGREDLPG 345
            G +  S  Q+  +R N P    +   + S      GI +YA N ++ + G      DL  
Sbjct: 1153 GKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQA 1212

Query: 346  -YRGIRFSVRRHQHNNQLGDHSVQHEQL-KRRISRHGSSIQLL 468
             +R  R+  ++     +L       E++ KR++++ G + +++
Sbjct: 1213 IFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV 1255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,172
Number of Sequences: 28952
Number of extensions: 307350
Number of successful extensions: 951
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)