Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b19
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 188 2e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 8e-43
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 162 1e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 133 7e-32
09_02_0366 + 7941550-7942161,7942230-7942775 28 3.6
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 3.6
08_02_1238 + 25486263-25487574,25488210-25489117 27 8.4
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 27 8.4
03_05_0796 + 27787401-27788831 27 8.4
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 27 8.4
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 188 bits (459), Expect = 2e-48
Identities = 93/134 (69%), Positives = 107/134 (79%)
Frame = +1
Query: 64 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 243
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 244 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 423
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 424 VTNAAARLRSQENE 465
VTN ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 169 bits (412), Expect = 8e-43
Identities = 82/122 (67%), Positives = 97/122 (79%)
Frame = +1
Query: 64 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 243
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 244 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 423
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 424 VT 429
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 162 bits (394), Expect = 1e-40
Identities = 76/102 (74%), Positives = 87/102 (85%)
Frame = +1
Query: 160 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 339
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 340 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 465
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 64 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 156
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 133 bits (322), Expect = 7e-32
Identities = 62/96 (64%), Positives = 76/96 (79%)
Frame = +1
Query: 52 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 231
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 232 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 339
IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -3
Query: 454 GSGGERPHSSL*C*AAGLFPRSASASSKRHHERSLRSTSCFASSRFPAL*HCELGPYGIH 275
G+GGE S+ L+P S+ +HH S+S +S+ A H G G H
Sbjct: 27 GAGGEEDDQSMLL--LSLWPPGHSSHHHQHHHHGAASSSACSSASISAAAHSG-GGGGGH 83
Query: 274 LGAYDGSSCW 245
A +S W
Sbjct: 84 GAAAAAASSW 93
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 154 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 315
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 316 EILMMQNRKYCAEIAH 363
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 405 GSFHDQLPLL----RRDTMSDLCAVLPVLHHQ 322
G+ H+Q P L RRD ++D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 351 RDRSWCLFEEAEADRGKSPAAQHQSDECGRSPP 449
+ R++ LF+E D KSP AQ S SPP
Sbjct: 472 KKRAFRLFQEDSLDIRKSPEAQMNSPSSVLSPP 504
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 378 EAEADRGKSPAAQHQSDECGR 440
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 473 YIYSFSWERRRAAAFVTLMLSCWALSTISFRFFEE 369
Y+++ ER A + +TLM++C++L + F +
Sbjct: 177 YLFNSQLERNIALSIITLMITCFSLVVVGGFLFHK 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,628
Number of Sequences: 37544
Number of extensions: 264507
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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