Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b17
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     27   0.20 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.20 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.20 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.61 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.61 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   7.5  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -3

Query: 712 HHISSSSSRFAYRNHKKLPNTPCIECSG*SQYSFHPSLVR*CNPQRMAPMVCPPTQHCKV 533
           HHI     ++ Y NH+   +       G   Y +HP L     P  +   + PP  H   
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNY-YHPQLHSHHGPP-IHHQIRPPILHDTQ 110

Query: 532 QLVLQLHE*LP-SAQMSLMDGTLELTP 455
            +   L+   P ++  +++    ++TP
Sbjct: 111 PMCESLNTQPPVTSSSNILQNLADITP 137


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -3

Query: 712 HHISSSSSRFAYRNHKKLPNTPCIECSG*SQYSFHPSLVR*CNPQRMAPMVCPPTQHCKV 533
           HHI     ++ Y NH+   +       G   Y +HP L     P  +   + PP  H   
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNY-YHPQLHSHHGPP-IHHQIRPPILHDTQ 110

Query: 532 QLVLQLHE*LP-SAQMSLMDGTLELTP 455
            +   L+   P ++  +++    ++TP
Sbjct: 111 PMCESLNTQPPVTSSSNILQNLADITP 137


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -3

Query: 712 HHISSSSSRFAYRNHKKLPNTPCIECSG*SQYSFHPSLVR*CNPQRMAPMVCPPTQHCKV 533
           HHI     ++ Y NH+   +       G   Y +HP L     P  +   + PP  H   
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNY-YHPQLHSHHGPP-IHHQIRPPILHDTQ 110

Query: 532 QLVLQLHE*LP-SAQMSLMDGTLELTP 455
            +   L+   P ++  +++    ++TP
Sbjct: 111 PMCESLNTQPPVTSSSNILQNLADITP 137


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 387 NEIQKC*QRLYRVIPKMLEFNNKLFTKLVINSRYRQGAGLV 265
           +E+QK  Q +YR++ + +E  NKLF   ++   ++ G  +V
Sbjct: 610 HELQKLAQ-VYRILGETIETWNKLFGYQILLITFQSGLNVV 649


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 712 HHISSSSSRFAYRNHKKLPNTPCIECSG*SQYSFHPSL 599
           HHI     ++ Y NH+   +       G   Y +HP L
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNY-YHPQL 89


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 509 IASICSNEPNGWHFGINS 456
           + SIC +  +G H+G+ S
Sbjct: 85  LCSICGDRASGKHYGVYS 102


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 561 CVHQHSIVKFSWCCSYMNS 505
           C+ Q + + FS+C  Y NS
Sbjct: 261 CLIQFNTIVFSFCYCYYNS 279


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 536 SSAGVAAT*IASICSNEPNGWHFGIN 459
           +SAG+  T  +++     +GW FG N
Sbjct: 135 ASAGINKTFKSTLTGTPVDGWLFGDN 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,304
Number of Sequences: 336
Number of extensions: 4099
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)