Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b17
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28715.1 68416.m03584 H+-transporting two-sector ATPase, puta...   252   2e-67
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta...   252   2e-67
At1g77320.1 68414.m09005 BRCT domain-containing protein contains...    29   4.0  
At5g24820.1 68418.m02932 aspartyl protease family protein low si...    28   7.1  
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    27   9.3  
At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containi...    27   9.3  

>At3g28715.1 68416.m03584 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score =  252 bits (617), Expect = 2e-67
 Identities = 108/193 (55%), Positives = 147/193 (76%)
 Frame = +1

Query: 112 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVS 291
           FNI  GYLE + RG + G+L  +DY NL QCE L+D+K+HL  T YG +L NEPSPL  +
Sbjct: 9   FNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQNEPSPLHTT 68

Query: 292 TIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPK 471
           TI +K   KLV +++H+   + EP+STFL++I Y +MIDN++L++TGTLH+R + ELI K
Sbjct: 69  TIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEK 128

Query: 472 CHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKA 651
           CHPLG F+ +  + VA    ELY  VLVDTPLAP+F +C++ +DLD+MNIEI+RNTLYKA
Sbjct: 129 CHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKA 188

Query: 652 YLEAFYDFCKQIG 690
           YLE FY+FC+++G
Sbjct: 189 YLEDFYNFCQKLG 201


>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score =  252 bits (617), Expect = 2e-67
 Identities = 108/193 (55%), Positives = 147/193 (76%)
 Frame = +1

Query: 112 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVS 291
           FNI  GYLE + RG + G+L  +DY NL QCE L+D+K+HL  T YG++L NEPSPL  +
Sbjct: 9   FNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGSYLQNEPSPLHTT 68

Query: 292 TIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPK 471
           TI +K   KLV +++H+   + EP+STFL++I Y +MIDN++L++TGTLH+R + ELI K
Sbjct: 69  TIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEK 128

Query: 472 CHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKA 651
           CHPLG F+ +  + VA    ELY  VLVDTPLAP+F +C++ +DLD+MNIEI+RNTLYKA
Sbjct: 129 CHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKA 188

Query: 652 YLEAFYDFCKQIG 690
           YLE FY FC+++G
Sbjct: 189 YLEDFYKFCQKLG 201


>At1g77320.1 68414.m09005 BRCT domain-containing protein contains
           Pfam profile PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 783

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 535 LYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRN 636
           LY+ +   TPL  F   CI     +E N+E++RN
Sbjct: 463 LYSPLPCQTPLPGFESLCICSSQHNEKNVELLRN 496


>At5g24820.1 68418.m02932 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 407

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +1

Query: 196 VQCETLEDLKLHLQGTDY-----GTFLANEPSPLSVSTIDDKLREK 318
           ++ ++L  L LH QG DY     G +L + PS L  + +   ++++
Sbjct: 322 LEIDSLPKLTLHFQGLDYTISNKGLYLQDSPSSLCTALVRSSMKDE 367


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 454 SELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCIS 594
           S ++  C  L      + IH       L + V V TPL  F++ C S
Sbjct: 289 SVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSS 335


>At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 743

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/51 (21%), Positives = 21/51 (41%)
 Frame = +1

Query: 436 LHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDC 588
           + Q P   ++P C  LG+  + + IH         + + V + L   +  C
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,821
Number of Sequences: 28952
Number of extensions: 339679
Number of successful extensions: 814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)