Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b16
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)        111   3e-25
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)        110   7e-25
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)         106   1e-23
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   29   2.7  
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                28   4.7  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            28   6.2  
SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)                    27   8.2  

>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score =  111 bits (268), Expect = 3e-25
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
 Frame = +3

Query: 3   ICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSN 179
           +CGD YD+  P+P  +  G +  G I   Y  GQ+ +  + IT  H+G+ EF++    + 
Sbjct: 66  VCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELELHITVSHKGWSEFRVGDIGAP 123

Query: 180 NEQECFEKYLLELEDGGTKY-YPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCP 356
              +    +LL+LEDG T++ +P   G Y +  +LPAG+ C HCVLQW +  GN+WG   
Sbjct: 124 PITQAKLNHLLKLEDGTTRWMHPGKIGLYKIMLQLPAGLKCRHCVLQWWWRTGNSWGCDS 183

Query: 357 NGTGALGCGNQETFWACTDVSIKP 428
           +G G +G G QE F  C D++IKP
Sbjct: 184 DGCG-MGHGPQEHFVNCADITIKP 206


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score =  110 bits (265), Expect = 7e-25
 Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
 Frame = +3

Query: 3   ICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSN 179
           +CGD YD+  P+P  +  G +  G I   Y  GQ+ +  + IT  H+G+ EF++    + 
Sbjct: 66  VCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELQLNITVSHKGWSEFRVGDIGTP 123

Query: 180 NEQECFEKYLLELEDGGTKY-YPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCP 356
              +    +LL+LEDG T++ +P  +G Y +  +LPAG+ C HCVLQW +  GN+WG   
Sbjct: 124 PITQAKLNHLLKLEDGTTRWMHPGKAGLYKIMLQLPAGLKCRHCVLQWWWRTGNSWGCDS 183

Query: 357 NGTGALGCGNQETFWACTDVSIKP 428
           +G G LG G QE F  C D++I P
Sbjct: 184 DGCG-LGHGPQEHFVNCADITIIP 206


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score =  106 bits (255), Expect = 1e-23
 Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
 Frame = +3

Query: 3   ICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNN 182
           +CGD Y +  P PH   G Y  G I   Y+ GQ+I   + ITA H+G++E+++    +  
Sbjct: 68  VCGDSYSNPSP-PHVYPGKYATGFITQTYTQGQIISVKIHITANHQGWFEYRIGKIGTPP 126

Query: 183 EQECFEKYLLELEDGGTKYYPKSSG-RYDVR-YRLPAGVSCEHCVLQWTYTAGNNWGVCP 356
             +     LL   +G T++    SG  Y+ +   LPA ++C+HCV+QW +  GN WG C 
Sbjct: 127 ITQSKLTQLLASAEGQTRFPLTGSGSSYETQTLVLPADLTCDHCVIQWWWKVGNTWG-CE 185

Query: 357 NGTGALGCGNQETFWACTDVSIKP 428
           NG    G G QETF  C DV I P
Sbjct: 186 NGKCGNGLGPQETFVNCADVKILP 209


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 448 PDTEASTGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETP 287
           P T  +T L+   +HA+ +  +  P  P P    P  L   Y+H  T  S  TP
Sbjct: 402 PSTPKATRLVHPHLHAKYIHAYT-PSTPTPTRPVPPRLHTEYIHAYTP-STPTP 453



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 448 PDTEASTGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETP 287
           P T  +T L+   +HA+ +  +  P  P P    P  L   Y+H  T  S  TP
Sbjct: 585 PSTPKATRLVHPHLHAKYIHAYT-PSTPTPTRPVPPRLHTEYIHAYTP-STPTP 636


>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 303 AHTRPPQEADTSRRNDHCSSGNTSCRHLLIPGGISRSIP 187
           A+   PQ+A T   +       TSC+H+ +P G   S+P
Sbjct: 474 AYQGSPQDAVTGAESFSRWWTGTSCKHVTLPAGALASVP 512


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 282 PAGVSCEHCVLQWTYTAGNNWGVCPNGTGALG----CGNQETFWACTDVSIKPV 431
           P G +C            + W +CPNGT +LG    C      ++C  + + PV
Sbjct: 280 PKGYACPRNDTDNMIKCPDGWALCPNGTYSLGAQIKCTPCLPGYSCPSIEMGPV 333


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 288 GVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGNQETFWA--CTDVSIKPVE 434
           G +CE  V + +     N GVC N  G   C  +  F    C     KP+E
Sbjct: 310 GKNCEQDVNECSVNPCKNGGVCKNEHGGYSCACKAGFTGKNCEQAPSKPLE 360


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 376 PRAPVPLGQTPQLLPAVYVHCRTQCSHETP 287
           PR PVP   TP++LPA Y   R   S  TP
Sbjct: 523 PRTPVPAYFTPRVLPA-YTTPRVHHSPRTP 551


>SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)
          Length = 592

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 252 CSSGNTSCRHLLIPGGI 202
           C  G TSCR + +PGG+
Sbjct: 227 CRGGMTSCRGITLPGGV 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,330,436
Number of Sequences: 59808
Number of extensions: 458919
Number of successful extensions: 1347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)