Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b16
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 2.4
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 2.4
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 28 4.1
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 28 4.1
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 28 4.1
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 28 5.4
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 28 5.4
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 28 5.4
Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical p... 27 7.2
Z83216-6|CAB62783.1| 534|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 27 7.2
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 27 7.2
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 27 7.2
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 27 7.2
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 27 7.2
Z29121-2|CAA82388.2| 294|Caenorhabditis elegans Hypothetical pr... 27 9.5
U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF332212-1|AAK17983.1| 231|Caenorhabditis elegans nuclear recep... 27 9.5
AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormo... 27 9.5
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 255 GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 386
GR D++ + G E L W T+ NW C G A G N
Sbjct: 411 GRSDIKCFID-GQLAETIELSWVVTSATNWDRCSIGVSADGTAN 453
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 255 GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 386
GR D++ + G E L W T+ NW C G A G N
Sbjct: 411 GRSDIKCFID-GQLAETIELSWVVTSATNWDRCSIGVSADGTAN 453
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +3
Query: 12 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 101
D DD PP P +GG+ GV + YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 564 RFKKNKFISYNHRWPKNAKRIVKLITIIYHQLRGSVSSF 448
+F++ K S + RWPKN K ++T I + +G + F
Sbjct: 872 QFRQKK--SNSLRWPKNLKEAQDIVTKIEKKFKGELKEF 908
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 564 RFKKNKFISYNHRWPKNAKRIVKLITIIYHQLRGSVSSF 448
+F++ K S + RWPKN K ++T I + +G + F
Sbjct: 872 QFRQKK--SNSLRWPKNLKEAQDIVTKIEKKFKGELKEF 908
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 333 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 464
G++ V P G+ + G++ET C +S++ + A +G + P+
Sbjct: 794 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 836
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 333 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 464
G++ V P G+ + G++ET C +S++ + A +G + P+
Sbjct: 816 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 858
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 333 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 464
G++ V P G+ + G++ET C +S++ + A +G + P+
Sbjct: 816 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 858
>Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical
protein Y41E3.19 protein.
Length = 331
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +3
Query: 342 WGVCPNGTGALGCGNQETFW----ACTDVSIKPVEASVSGMS 455
+G+ N G GC +++ FW + T++ +P S+S MS
Sbjct: 151 YGLVKNSDGTNGCSSRQCFWNGENSETEICQRPRARSISEMS 192
>Z83216-6|CAB62783.1| 534|Caenorhabditis elegans Hypothetical
protein C08F11.8 protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 197 REIPPGIRRWRHEVLPE 247
+EI PG+R WR EVLPE
Sbjct: 236 KEIIPGVRSWR-EVLPE 251
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 392 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 270
++ + +S A GCVR + D T+DPRR +P
Sbjct: 188 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 228
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 392 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 270
++ + +S A GCVR + D T+DPRR +P
Sbjct: 294 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 334
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 392 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 270
++ + +S A GCVR + D T+DPRR +P
Sbjct: 294 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 334
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 392 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 270
++ + +S A GCVR + D T+DPRR +P
Sbjct: 204 MMAEVEEKENSEAAKEVRHPGCVRLIFDISTTKDPRRYNLP 244
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 392 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 270
++ + +S A GCVR + D T+DPRR +P
Sbjct: 294 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 334
>Z29121-2|CAA82388.2| 294|Caenorhabditis elegans Hypothetical
protein ZK757.2 protein.
Length = 294
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 437 SFNGLNRNIRACPECLLIPASQSSSSVGANTPVVTGCVRP 318
SF+ +R I A P LL+P+S SSSSV P+ P
Sbjct: 222 SFHLTHRPIGASPT-LLVPSSSSSSSVRGPIPLQRAHTEP 260
>U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical
protein C44B7.4 protein.
Length = 329
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 437 SFNGLNRNIRACPECLLIPASQSSSSVGANTPV 339
SFN ++ N + CP C+ +P +S + A + +
Sbjct: 160 SFNKISDNGKYCPPCICVPNPTDASYLEAESQI 192
>AF332212-1|AAK17983.1| 231|Caenorhabditis elegans nuclear receptor
NHR-98 protein.
Length = 231
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 83 EVLLGTGHRHHRRDNRLPPRLLGIQTMHRPQQ*RTGMLREI-PPGI-RRWRHEVLPEEQW 256
EVLL ++ N L +G+Q + PQQ + ++ +I GI + W E+L +W
Sbjct: 90 EVLLNGSETPYQVSNVLQKLAIGLQNIRGPQQKVSQIVTKIGKEGIFKLWEEEMLRMAKW 149
>AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 98 protein.
Length = 433
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 83 EVLLGTGHRHHRRDNRLPPRLLGIQTMHRPQQ*RTGMLREI-PPGI-RRWRHEVLPEEQW 256
EVLL ++ N L +G+Q + PQQ + ++ +I GI + W E+L +W
Sbjct: 170 EVLLNGSETPYQVSNVLQKLAIGLQNIRGPQQKVSQIVTKIGKEGIFKLWEEEMLRMAKW 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,898
Number of Sequences: 27780
Number of extensions: 319459
Number of successful extensions: 932
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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