Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b16
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.92 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 347 TPVVTGCVRPL*DAMLTRDPRRKPIPHVVTTTALRVI 237
           TP  T   + L  A + R+ RR P PH  T    RV+
Sbjct: 161 TPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVL 197


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 258 DHCSSGNTSCRHLL-IPGGISRSIPVRYCWGRC 163
           D C +  T   H L  PG + + IP   C GRC
Sbjct: 27  DECQA--TPVIHFLQYPGCVPKPIPSYACRGRC 57


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +3

Query: 312 LQWTYTAGNNWGVCPNGTGALGCGNQET 395
           L+W    G  WG  P+    +   N +T
Sbjct: 283 LKWLVNWGEQWGFLPSKDSLVFVDNHDT 310


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 567 FRFKKNKFISYNHRWPKNAKRIVKLITIIYH 475
           F  +K++  S+N++  K+ KRI   +  + H
Sbjct: 59  FEIEKSEDDSFNNQADKSEKRIPLYVCRVLH 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,832
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)