Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b16
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    29   2.2  
At4g08097.1 68417.m01316 hypothetical protein                          28   5.0  
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ...    27   8.8  

>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +3

Query: 39  PHELGGAYGNGVIVAKYSSGQVIDT--TVEITAYHRGYWEFKLCTDPSNNEQECFEKYLL 212
           P   G A GN   +    S  +  T  T  +   + GY  ++  +DP N     +  Y  
Sbjct: 68  PQPTGPATGNVQEIPNTVSFTISSTSGTANVAQDYSGYTPYQTSSDPHNYSNTGYSNYYS 127

Query: 213 ELEDGGTKYYPKSSGRY 263
             +   ++ YP+  G Y
Sbjct: 128 GYQQQPSQSYPQPVGAY 144


>At4g08097.1 68417.m01316 hypothetical protein
          Length = 346

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 72  VIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSN 179
           V+V K +S +   + V++TA+   YW FK  TD  N
Sbjct: 155 VVVIKLNSTKCKPSMVDMTAFRMNYWVFK--TDSVN 188


>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 493

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 75  IVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQE 191
           + A  SS QV +T  E+    R   EF L   P N E+E
Sbjct: 453 VPATASSSQVTETVQEVKKLKRRVLEFDLNELPPNEEEE 491


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,752
Number of Sequences: 28952
Number of extensions: 305761
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)