Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b15
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 80 1e-15
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 60 2e-09
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 52 3e-07
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 52 3e-07
02_01_0747 - 5561298-5562005,5563080-5563185,5563759-5563775 28 5.5
06_03_1411 - 29981153-29981407,29982072-29982308,29982975-299833... 27 9.6
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 80.2 bits (189), Expect = 1e-15
Identities = 55/180 (30%), Positives = 91/180 (50%)
Frame = +1
Query: 1 NEGFARFYQYYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAH 180
NEGFA + Y + PE T+F+ E+ D++ +H + +++VN +
Sbjct: 336 NEGFATWVSYLAADNFFPEWNVWTQFL-EESTTGFKLDALAGSHPI-EVDVNHVDEIDEI 393
Query: 181 FSTITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGAL 360
F I+Y +GAA++RM Q LG ETF K L Y+ + ++ A+ L+ AA+E+G+
Sbjct: 394 FDAISYRKGAAVIRMLQSYLGAETFQKSLAAYIEKFAYSNAKTEDLW-----AALEEGS- 447
Query: 361 NGYGGITIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQERWERNTGVSQFPSLWHIPIT 540
G + T +W+++ G+P++ V + EM TQ GV Q W +PIT
Sbjct: 448 ----GEPVKTLMHSWTKQQGYPVVNVKLKDGKLEMEQTQFLSSGAEGVGQ----WVVPIT 499
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/166 (24%), Positives = 86/166 (51%)
Frame = +1
Query: 43 SVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAHFSTITYARGAAILR 222
S P+ T+F+ + A+ DS +H + ++ ++ + V F I+Y +GA+++R
Sbjct: 312 SFFPQWNIWTQFL-DSTTSALKLDSQAESHPI-EVEIHHASEVDEIFDAISYDKGASVIR 369
Query: 223 MTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGALNGYGGITIDTYFRT 402
M Q LG E F K L +Y+++ ++ A+ L+ L+ + G + T
Sbjct: 370 MLQSYLGAERFQKALTSYIKKYAYSNAKTEDLWAVLEEVS----------GEPVKDLMTT 419
Query: 403 WSEKAGHPLLTVTINQRTGEMIVTQERWERNTGVSQFPSLWHIPIT 540
W+++ G+P+++V + + ++ + Q+++ N G S +W +PIT
Sbjct: 420 WTKQQGYPVISVKL--KGHDLELEQDQFLLN-GTSG-AGIWIVPIT 461
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = +1
Query: 1 NEGFARFYQYYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAH 180
NEGFA + Y S PE T+F+ + A+ DS+ +H + ++ ++ + + +
Sbjct: 327 NEGFATWMSYLAVDSFFPEWNIWTQFL-DSTTSALKLDSLAESHPI-EVEIHHASEIDSI 384
Query: 181 FSTITYARGAAILRMTQHLLGVETF 255
F +I+Y +GA+++RM Q LG E F
Sbjct: 385 FDSISYDKGASVIRMLQSYLGAERF 409
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Frame = +1
Query: 28 YYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALT------DLNVNDPTTVSAHFST 189
Y ++ PE T+F+ ++ + D++ +H + +++N + + A F +
Sbjct: 297 YLAVEALFPEWNNWTQFL-DETTSGLRLDALAESHPIEIWKYMKAVDINHASEIDAIFDS 355
Query: 190 ITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGALNGY 369
I+Y +GA+++RM Q LG E F K L +Y+++ ++ A+ L+ L+ +
Sbjct: 356 ISYDKGASVIRMLQSYLGAERFQKALASYIKKYAYSNAKTEDLWAVLEEES--------- 406
Query: 370 GGITIDTYFRTWSEKAGHPLL 432
G + TW+++ G+P++
Sbjct: 407 -GEPVKDLMTTWTKQQGYPVI 426
>02_01_0747 - 5561298-5562005,5563080-5563185,5563759-5563775
Length = 276
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 174 RALFYNNLRERCCHSQD 224
RA F +N+ E+CCHS++
Sbjct: 254 RAYFLHNMLEKCCHSEN 270
>06_03_1411 -
29981153-29981407,29982072-29982308,29982975-29983342,
29983448-29983604,29983646-29983708
Length = 359
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -1
Query: 375 TAIAVQSAIFHSSRIQSREKVMRLSNIELSFTEIVAEAFNEGFDSK*VLSHPENGSTSRV 196
TA + +FH + + E+ ++I + EA +GF S P + V
Sbjct: 60 TACYINDHLFHHLKRFASEQ----NSISADVLKKAYEATEDGFFSVVTKQWPVKPQIAAV 115
Query: 195 GYCRKVRADCGRIIYI 148
G C V CG I+Y+
Sbjct: 116 GSCCLVGVICGGILYV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,168,433
Number of Sequences: 37544
Number of extensions: 380340
Number of successful extensions: 1083
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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