Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b15
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                95   4e-20
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 79   2e-15
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 66   2e-11
SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)            40   0.002
SB_34160| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)               31   1.1  
SB_29373| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49237| Best HMM Match : GAT (HMM E-Value=3.4)                       30   1.8  
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)                     29   2.4  
SB_34880| Best HMM Match : Methuselah_N (HMM E-Value=9.6)              29   3.2  
SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   9.8  
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_52967| Best HMM Match : zf-CCCH (HMM E-Value=4.7)                   27   9.8  
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 6/187 (3%)
 Frame = +1

Query: 1    NEGFARFYQYYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAH 180
            NEGFA F +        PE     +F++++ Q++M  D +  +H ++ + V DP  +++ 
Sbjct: 637  NEGFASFVENIGVNHTTPEWRMMEQFLLDKTQLSMNLDQLSNSHPISVV-VKDPAEINSL 695

Query: 181  FSTITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTAL-DAAAVEDGA 357
            F TI+Y +GAAI+RM +  LG + F KGL+ YL + +F  AE + L+ A  + ++V   +
Sbjct: 696  FDTISYDKGAAIIRMLKSFLGDDVFQKGLQKYLNKHKFGNAETNQLWDAFTEESSVSASS 755

Query: 358  LNGYGGITIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQERWERNTGV-----SQFPSL 522
               +    + +   TW+ + G P+  VTI QR    + +Q+ +  +  V     SQF   
Sbjct: 756  TKNFR--DVKSVMDTWTLQMGFPV--VTIKQRGDSAVASQKHFRIHPKVKPSLRSQFDYK 811

Query: 523  WHIPITW 543
            W IP T+
Sbjct: 812  WIIPFTY 818


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
 Frame = +1

Query: 1   NEGFARFYQYYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAH 180
           NE FA    Y    +  P    +  F+V+ V++AM  D + ++H +  + V  P  +   
Sbjct: 331 NEAFATLMAYKGADAAEPSWHVDQHFLVDTVEVAMTLDGLASSHPIR-VPVISPDEIGEI 389

Query: 181 FSTITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGAL 360
           F  I+Y++GA +LRM ++++G +TF+ GLR YL+   +  A    L+ +   A+   G+ 
Sbjct: 390 FDAISYSKGATVLRMLEYIIGNDTFIDGLRRYLKTHAYGNANTDDLWESFRQASCTRGSC 449

Query: 361 NGYGGITIDTYFRTWSEKAGHPLLTV-TINQRTGEMIVTQERW----ERNTGVSQFPS-- 519
                + +     TW+ + G+P++ +     +T    VTQ+ +      N   S++ S  
Sbjct: 450 -----VDVKYIMDTWTLQMGYPVVMIKKAKDKTPSFAVTQKHFLFDPMANVSASKYKSPY 504

Query: 520 --LWHIPITW 543
              W IP T+
Sbjct: 505 NYKWMIPFTY 514


>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 9/216 (4%)
 Frame = +1

Query: 22   YQYYLTASVAPELGYET-RFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAHFSTITY 198
            Y+  + A +A EL ++  +F++     A   D + ++H +  + VN P  ++  F +I+Y
Sbjct: 526  YKQRVAAVIAHELAHQDDQFVITDSDTAFSLDGLVSSHPIK-VAVNHPAEINEIFDSISY 584

Query: 199  ARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGALNGYGGI 378
             +G+ ILRM +  LG   F KGL  YL+   +  AE   L+ AL   + +D         
Sbjct: 585  NKGSCILRMLEDFLGENKFKKGLTRYLKRHAYGNAETDDLWKALKEESGQD--------- 635

Query: 379  TIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQER--WERNTGV------SQFPSLWHIP 534
             +     TW+ + G+P++ +   + +  + V+Q+   ++ N  V      S F   W IP
Sbjct: 636  -VKGVMDTWTLQMGYPVVDIR-RKNSSHVTVSQKHFLYDPNANVSASKYKSPFNYQWVIP 693

Query: 535  ITWTRAGAPEFEDLKPSQFISQQVTSINRGTTGLEW 642
             T+     P           S++   IN+ +  LEW
Sbjct: 694  FTYKTKAMP-----------SEKKMLINKTSVDLEW 718


>SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)
          Length = 287

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 40/170 (23%), Positives = 70/170 (41%)
 Frame = +1

Query: 1   NEGFARFYQYYLTASVAPELGYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVSAH 180
           NEGFA +  Y    +V PE     +FIVE +  A   D + ++H +    ++DP  +   
Sbjct: 101 NEGFASYVWYLGLDAVEPEWNLMNQFIVETLSNAQILDGMTSSHPII-RPISDPAKMGDL 159

Query: 181 FSTITYARGAAILRMTQHLLGVETFVKGLRNYLRERQFNVAEPHHLFTALDAAAVEDGAL 360
             +ITY                       + YL+E  +  A+   L+ AL   +    + 
Sbjct: 160 LDSITYD----------------------KKYLKEHVYGSAQTDDLWNALTEESCRRDSC 197

Query: 361 NGYGGITIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQERWERNTGVSQ 510
                + +     TW+ + G P++++   Q      VTQ R+  +T VS+
Sbjct: 198 -----VDVKNVMDTWTLQMGFPVVSIK-RQNGTHFSVTQSRFLFDTRVSK 241


>SB_34160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +1

Query: 373 GITIDTYFRTWSEKAGHPLLTVTINQRTG--EMIVTQERWERNTGVSQFPSLWHIPI--- 537
           G  +     +W+++ G P+LTV   Q+    E+ +TQ ++  +   +     W +P+   
Sbjct: 15  GKPVAKVMNSWTKQMGFPVLTVKAEQKGNDRELTITQNKFCADGSATGADQRWKVPVCIS 74

Query: 538 TWTRAGAPEFEDLKPSQFISQQVTSI 615
           T T    P  + L  +   S QV+ +
Sbjct: 75  TCTSLSEPAVKTLLEADSCSVQVSDV 100


>SB_45256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 156 IYIEICQCMSGVNGIREHGHLDLLNDKTRLIAQLRCNRCRQIIL 25
           +Y+E C+CM   N        DLL    RL   L C  CR +++
Sbjct: 6   LYVEACKCMLYFNSENPSKWDDLLQLLPRLRQSLSCRVCRGLVV 49


>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
          Length = 351

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 156 IYIEICQCMSGVNGIREHGHLDLLNDKTRLIAQLRCNRCRQIIL 25
           +Y+E C+CM   N        DLL    RL   L C  CR +++
Sbjct: 6   LYVEACKCMLYFNSENPSKWDDLLQLLPRLRQSLSCRVCRGLVV 49


>SB_29373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = -1

Query: 207 TSRVGYCRKV--RADCGRIIYIEICQCMS-GVN----GIREHGH 97
           T   G CR+V     CGR    EIC CMS G++    G+ EH H
Sbjct: 12  TDTTGACRRVICTLHCGRDEESEICTCMSNGISRKFLGVTEHQH 55


>SB_49237| Best HMM Match : GAT (HMM E-Value=3.4)
          Length = 623

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +1

Query: 322 TALDAAAVEDGALNGYGGITIDTYFRTWSEKAGHPLLTVTINQRT----GEMIVTQERWE 489
           T  D   +      GY  IT DT     S   GH ++T T   RT    G +++T     
Sbjct: 125 TIKDTPLLRTPCYYGYPAIT-DTLLLRTSHYYGHLVITDTPLLRTSHYYGHLVITDTPLL 183

Query: 490 RNTGVSQFPSLWHIPITWT 546
           R +     P++  IP+ WT
Sbjct: 184 RTSHFFGHPTIADIPLLWT 202


>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
          Length = 817

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -1

Query: 462 FPSSLVNSNSQKWMSGLLGPSSEVGINCNTAIAVQSAIFHSSRIQSREKVMRLSNIELSF 283
           +P     S+ +KW       S  VG+N N  +  Q+ +F  S +Q  +       + +  
Sbjct: 161 WPQKTWLSHYKKWAWAFRCESFIVGVNTNNGLERQNHVFKCSYLQKHKNNSLSGMLAILI 220

Query: 282 TEIVAEAFN 256
            E + ++FN
Sbjct: 221 EEFLPDSFN 229


>SB_34880| Best HMM Match : Methuselah_N (HMM E-Value=9.6)
          Length = 343

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -1

Query: 441 SNSQKWMSGLLGPSSEVGINCNTAIAVQSAIFHSSRIQSREKVMRLSNIELSFTEIVAEA 262
           S+ +KW       S  VG+N N  +  Q+ +F  S +Q  +       + +   E + ++
Sbjct: 281 SHYKKWAWAFRCESFIVGVNTNNGLERQNHVFKCSYLQKHKNNSLSGMLAILIEEFLPDS 340

Query: 261 FN 256
           FN
Sbjct: 341 FN 342


>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 908

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 DRSQCK*SDHSQRALFYNNLRERCCHSQD 224
           D SQ    DHSQ  L+ ++    C HSQD
Sbjct: 812 DHSQNPLCDHSQNPLYDHSQNPLCDHSQD 840


>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1370

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 569 SNSGAPALVQVIGMCHRLGNCETPVLRSHLSCVTIISPVLWLIVTV 432
           S+S AP      G    +    +P++R+H SC  I+   +  I+ V
Sbjct: 619 SSSPAPRSADAPGKVSSMSTSTSPMMRAHNSCYAILDMSIQYIIYV 664


>SB_52967| Best HMM Match : zf-CCCH (HMM E-Value=4.7)
          Length = 226

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 DRSQCK*SDHSQRALFYNNLRERCCHSQD 224
           D SQ    DHSQ  L+ ++    C HSQD
Sbjct: 130 DHSQNPLCDHSQNPLYDHSQNPLCDHSQD 158


>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 61  GYETRFIVEQVQMAMFSDSVDTAHALTDLNVNDPTTVS 174
           G  TR ++  +     S+S  T+HA TD++ +    ++
Sbjct: 703 GRNTRMVMSDIARLRMSESTTTSHATTDVDTDGDADIN 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,556,598
Number of Sequences: 59808
Number of extensions: 423060
Number of successful extensions: 1474
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)