Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b15
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 183 FYNNLRERCCHSQDDSTLTWSRNLR*RP 266
           FY N  E+   S ++S +TW   L+ +P
Sbjct: 378 FYPNGTEKMTLSVNESNITWPGRLQTKP 405



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 115 SVDTAHALTDLNVNDPTTVSAHFSTI 192
           S+     +    +NDPTTVS    T+
Sbjct: 881 SIAAQRRIQSNGLNDPTTVSLAVDTV 906


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 192 NLRERCCHSQDDSTLTWSRNLR*RPPQLSP 281
           N + +CC +QDD    ++   + R P  +P
Sbjct: 441 NSKTKCCFAQDDGLCPYTLKHKIRVPPGTP 470


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 322 TALDAAAVEDGALNGYGGITIDTYFRTWSEKAGHPLLTVTINQRTGEMIVTQER 483
           T     ++  GA NG GG  +          A   L+ VT+   TGE ++T+E+
Sbjct: 32  TGASGGSIVVGANNGGGGGGLGI---ASGLSAMLSLVVVTVAISTGEWLLTEEK 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,040
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)