Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b10
(262 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 31 0.11
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 0.79
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 28 1.4
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 28 1.4
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 1.8
SB_22370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 2.4
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16) 26 4.2
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0) 26 5.5
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 25 7.3
SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25) 25 7.3
SB_17108| Best HMM Match : PKD (HMM E-Value=0.084) 25 7.3
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 25 7.3
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_28246| Best HMM Match : M (HMM E-Value=0.0007) 25 9.7
SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07) 25 9.7
SB_44630| Best HMM Match : HECT (HMM E-Value=0) 25 9.7
SB_32439| Best HMM Match : PHD (HMM E-Value=0.32) 25 9.7
SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27) 25 9.7
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 93 EDDLSVKETRCRKHGGECFSKGYCS--QSLIYEEASDCPEGNDC 218
++ ++V E HG ECFS GYC+ Q L E G C
Sbjct: 520 DNSVTVSENELLWHGSECFSIGYCAYKQDLFMEATCLMSVGCQC 563
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 87 NSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 215
+ D+ +C KH C S S S + + +DC +G+D
Sbjct: 3156 DGSDEKGCPPKQCAKHQYRCASGRCISASWVCDHVNDCGDGSD 3198
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 GNSEDDLSVKETRCRKHGGECFSKGYC-SQSLIYEEASDCPEGND 215
G+ D+ C H +C S G+C + S + + +DC +G+D
Sbjct: 2483 GDGSDEQQCVNYTCPNHTFKCTS-GHCIANSSVCDGDTDCADGSD 2526
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 GNSEDDLSVKETRCRKHGGECFSKGYC-SQSLIYEEASDCPEGND 215
G+ D+L T C +C SK C S + + + DC +G D
Sbjct: 2274 GDFSDELRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWD 2318
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +3
Query: 69 CILVYGNSEDDLSVKETRCRKHGGEC----FSKGYCSQSLIYEEASDCPEGNDCC 221
C ++ N + D+ R R+ G C SK C + + SDCP CC
Sbjct: 1592 CTMICTNPDLDIVNAPVRGRRKPGICPVMSVSKAPCPTTNQCSQDSDCPGSQKCC 1646
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 96 DDLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 218
DDL ++E + G+C YC + + CP+G+ C
Sbjct: 2194 DDLGLEEPK-----GQCMQGYYCDGRATHSQQHPCPKGHIC 2229
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 105 SVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 218
S ++ + H +C S +C ++ SDCP G+ C
Sbjct: 1985 SYQDNKGMSHCKDCPSGYFCHENSTTYVTSDCPPGSYC 2022
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 150 SKGYCSQSLIYEEASDCPEGNDCCIL 227
+K ++ ++AS CP+GN CC L
Sbjct: 188 NKNILGTTVCPDKASKCPDGNTCCKL 213
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 183 EEASDCPEGNDCCIL 227
+E S CP+GN CC L
Sbjct: 424 DETSQCPDGNTCCKL 438
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 189 ASDCPEGNDCCIL 227
AS+CP+GN CC L
Sbjct: 276 ASECPDGNTCCKL 288
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 168 QSLIYEEASDCPEGNDCCI 224
+ ++ + S CP+GN CC+
Sbjct: 112 KDVLCPDESVCPDGNTCCL 130
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 192 SDCPEGNDCCIL 227
S CP+GN CC L
Sbjct: 352 SQCPDGNTCCKL 363
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 69 CILVYGNSEDDLS--VKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 218
C + SE L+ +K C G ECF G+C + Y DC N C
Sbjct: 137 CYTGFSGSECQLASCIKVKNCSNRG-ECFESGFCKCDVGY-TGPDC-SNNSC 185
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 256 FSKITVYCYTKIQQSFPSGQSEASSYIKD*LQ*PFEKHSPP 134
F ++ +KI +F S S+ +S++++ LQ E H PP
Sbjct: 706 FDRVDDTDVSKIYDTFISYSSQDASWVRETLQRTLESHVPP 746
>SB_22370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 149 ETFSAVLPTSGLFYGQIIFTVSV 81
E ++V P+SG F+G +IFT V
Sbjct: 21 EELTSVQPSSGAFHGVVIFTFGV 43
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -2
Query: 228 LKYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSL 112
L+ +N+ +++ +L+H +++ SSL N+ R +S + L
Sbjct: 347 LERSNYRIKELEELVHQHEVENSSLRNNLTRTSSQVTKL 385
>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
Length = 285
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 189 LLHISKIDCSSLSRNILRRASDIW-----SLLRTNHLHCFRK 79
LL + DC+ L +++ +R++ +W SLLR HL K
Sbjct: 154 LLMVIPADCACLVQHVSKRSTKLWPNASISLLRYRHLQVAAK 195
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 99 DLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 215
D V +RC +H EC +K ++ + + +DC +G+D
Sbjct: 13 DEIVNCSRCPRHEFECENKLCVPRTWLCDGDNDCHDGSD 51
>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
Length = 1048
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 243 PFIVTLKYNNHSLRDSLKLLHISK--IDCSSLSRNILRRASDIWSLLR 106
PF + +YN +RD+ K++ K + S RNI+ A + +L R
Sbjct: 116 PFFRSREYNQFEVRDAAKIMRFEKAQVWLSCFERNIVYPAVFMSALTR 163
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 96 DDLSVKETRCRKHGGECFS---KGYCSQSLIYEEASDCPEGND 215
DD + ++ +C H GEC+ G + DCP+ D
Sbjct: 1625 DDGTYRDVQCSPHWGECWCTDINGNTRPETVTRGIPDCPKIRD 1667
>SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25)
Length = 317
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = -2
Query: 228 LKYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLKCTLHKIIK 49
++ H +R + + +S I C+++ + R L + + C RK+ L+ +IK
Sbjct: 248 IRGGRHRVRTVMFMAMLSSIQCNAVFKQQYERLKASGKLPKVALIACMRKMIVILNTMIK 307
>SB_17108| Best HMM Match : PKD (HMM E-Value=0.084)
Length = 464
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 243 PFIVTLKYNNHSLRDSLKLLHISK 172
P I+T KY+ HSL LK++HI +
Sbjct: 307 PRIMT-KYSKHSLDSILKVIHIKE 329
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +3
Query: 117 TRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 218
T+C EC S C + E S+C +C
Sbjct: 76 TKCESTKEECESTSECESTRECESTSECESTTEC 109
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 75 LVYGNSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCC 221
++ GN + D E C+ GG C G+ + A+ P CC
Sbjct: 438 IIEGNEQCDCG-DENSCKAEGGCCNPPGHPQACRLTLAATCSPSQGPCC 485
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 120 RCRKHGGECFSKGYCSQSLIYEEASDCPEG-NDC 218
+C HG C +G CS A C G NDC
Sbjct: 393 QCNGHGSICDERGKCSCE--NNTAEQCHSGQNDC 424
>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
Length = 1121
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 225 KYNNHSLRDSLKLLHISKIDCSSLSRNILRR 133
++NN+ LR + +L + C++L + +R+
Sbjct: 443 EFNNYPLRGTYRLCMSQPVSCTTLQNHTIRK 473
>SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07)
Length = 302
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 117 TRCRKHGGECF-SKGYCSQS-LIYEEASDC 200
T C HGG C+ + +C ++ YE + C
Sbjct: 194 TGCNAHGGHCWCDRAFCCRNPFKYENLASC 223
>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
Length = 1003
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 243 PFIVTLKYNNHSLRDSLKLLHISKID 166
PF+V +H +RD+L +H+ + D
Sbjct: 676 PFLVLEVRRDHLIRDTLSQIHLKEYD 701
>SB_32439| Best HMM Match : PHD (HMM E-Value=0.32)
Length = 38
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 57 FCAMCILVYGNSEDDL 104
FC +C+ VY N E D+
Sbjct: 8 FCPVCLKVYRNDESDM 23
>SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27)
Length = 399
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 204 RDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNH-LHCFR 82
R +L ++ +S I C +SR S +WSL T+H H F+
Sbjct: 265 RQTLHVIKVS-IGCHDISRVNETFFSLVWSLTNTSHGFHIFQ 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,899,570
Number of Sequences: 59808
Number of extensions: 139892
Number of successful extensions: 413
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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