Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b10
         (262 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    31   0.079
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR...    29   0.56 
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    27   1.7  
At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR...    27   2.3  
At5g43790.1 68418.m05355 pentatricopeptide (PPR) repeat-containi...    26   3.0  
At2g15090.1 68415.m01720 fatty acid elongase, putative similar  ...    26   3.9  
At1g78230.1 68414.m09116 leucine-rich repeat family protein            26   3.9  
At4g23860.2 68417.m03431 PHD finger protein-related similar to P...    25   5.2  
At4g23860.1 68417.m03430 PHD finger protein-related similar to P...    25   5.2  
At4g14780.1 68417.m02273 protein kinase, putative similar to pro...    25   5.2  
At5g61630.1 68418.m07733 hypothetical protein various predicted ...    25   6.9  
At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase fa...    25   9.1  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    25   9.1  
At1g13640.1 68414.m01603 phosphatidylinositol 3- and 4-kinase fa...    25   9.1  

>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 111 KETRC--RKHGGECFSKGYCSQSLIYEEASDCPEGNDCC 221
           K T C   ++ G+C+S G C     YE A+ C +G+ CC
Sbjct: 372 KSTCCCLYEYNGKCYSWGCCP----YESATCCDDGSSCC 406


>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -2

Query: 210 SLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLK 73
           S+R+  KLL++  ++C SL   IL    ++ SL R N  HC  KLK
Sbjct: 670 SIRNLNKLLNLDMLNCKSL--KILPTGFNLKSLDRLNLYHC-SKLK 712


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 18  QN*SEHVIMKFLLFCAMCILVYGNSE----DDLSVKETRCRKHGGECFSKGYCSQSLIYE 185
           Q  ++ VI K +  C     V+ +      D   +K+  CRKHG + +    CS+   Y 
Sbjct: 129 QRSNKEVIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKK--YA 186

Query: 186 EASDCPEGNDCC 221
             SDC   +  C
Sbjct: 187 VQSDCKAHSKTC 198


>At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 986

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 183 HISKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLKCTLH 61
           +IS +D S      L  +  +WS LRT  ++  R LK   H
Sbjct: 706 NISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTH 746


>At5g43790.1 68418.m05355 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 460

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 237 IVTLKYNNHSLRDSLKLLHISKIDCSSLSRNILRR 133
           I+T+  ++H+   S KLLH+S   C S + +ILR+
Sbjct: 32  IITIGLSHHTYPLS-KLLHLSSTVCLSYALSILRQ 65


>At2g15090.1 68415.m01720 fatty acid elongase, putative similar  to
           fatty acid elongase 1 [GI:881615]
          Length = 481

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 243 PFIVTLKYNNHSLRDSLKLLHISKIDCSS 157
           P + ++  N + LRD++K L++  + CS+
Sbjct: 187 PSLASMIVNKYKLRDNIKSLNLGGMGCSA 215


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -1

Query: 262 FFFSKITVYCYTKIQQSFPSGQSEASSYIKD*LQ*PFEKHSPPCFRHLVSFTDKSSSLFP 83
           F +S   ++ +    +S P  +++ S Y  D  +     H      +   FT++SS+L+P
Sbjct: 286 FLWSHRNLHKHRVSLKSQPLNKNQQSGYTSDFAEHNQSSHEEESTNYCADFTNQSSNLWP 345


>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 GGEC-FSKGYCSQSLIYEEASDCPEGN 212
           G EC F KGY  +  I+   +  PEGN
Sbjct: 39  GDECTFPKGYMKRQAIFSCITCTPEGN 65


>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 GGEC-FSKGYCSQSLIYEEASDCPEGN 212
           G EC F KGY  +  I+   +  PEGN
Sbjct: 39  GDECTFPKGYMKRQAIFSCITCTPEGN 65


>At4g14780.1 68417.m02273 protein kinase, putative similar to
           protein kinase ATMRK1 [Arabidopsis thaliana]
           gi|2351097|dbj|BAA22079
          Length = 364

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 192 KLLHISKIDCSSLSRNILRRASDIWS 115
           K+    KID  SL R + +  S +WS
Sbjct: 16  KIFRADKIDLKSLDRQLEKHLSRVWS 41


>At5g61630.1 68418.m07733 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 147

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 33  HVIMKFLLFCAMCILVYGNSEDDLSVKE 116
           H+I   LL CA+ + ++ N + D+ ++E
Sbjct: 62  HIIPFVLLACALVLWLFSNPDVDVGMRE 89


>At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to ACC oxidase, Lycopersicon
           esculentum [SP|P05116], gibberellin 3B-hydroxylase,
           Latuca sativa [gi:4164145]; contains Pfam domain
           PF03171, 2OG-Fe(II) oxygenase superfamily
          Length = 352

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 192 KLLHISKIDCSSLSRNILRRASDIWSLLR-TNH 97
           K ++I  ID   L + ILR A   W + R  NH
Sbjct: 30  KDINIPVIDLERLDKEILREACKEWGIFRLENH 62


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
            resistance protein-related low similarity to disease
            resistance protein RPP4 [Arabidopsis thaliana]
            GI:20270890; contains Pfam profiles PF00412: LIM domain,
            PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/17 (64%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
 Frame = -2

Query: 219  NNHSLRDSLK-LLHISK 172
            NNHSL+D+LK ++ ISK
Sbjct: 1590 NNHSLKDTLKEIISISK 1606


>At1g13640.1 68414.m01603 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 622

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 219 NNHSLRDSLKLLH-ISKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLKCTLHKIIK 49
           N+  L     L+H  S   C S + N L+R      +   +H  CF  LK T + I+K
Sbjct: 96  NDSPLLLKRNLMHRSSSTPCLSPTGNDLQRKDRSGPIEILSHSPCFLSLKQTANDIVK 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,503,993
Number of Sequences: 28952
Number of extensions: 97391
Number of successful extensions: 270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)