Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b07
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 60 1e-09
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 60 2e-09
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 59 4e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 54 1e-07
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 54 1e-07
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 52 3e-07
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 51 1e-06
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 50 1e-06
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 37 2e-06
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 49 4e-06
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 48 5e-06
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 48 9e-06
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 46 3e-05
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 46 4e-05
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 45 5e-05
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 45 5e-05
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 44 9e-05
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 42 5e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 42 6e-04
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 42 6e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 41 8e-04
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 41 8e-04
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 41 8e-04
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 41 0.001
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.001
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.002
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 39 0.003
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 38 0.006
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 37 0.017
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 37 0.017
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 35 0.052
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 35 0.052
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 34 0.091
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 33 0.16
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 32 0.49
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_47771| Best HMM Match : Annexin (HMM E-Value=0) 30 2.0
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 29 2.6
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.4
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 3.4
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 29 4.5
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 29 4.5
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05) 29 4.5
SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 6.0
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37) 28 6.0
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 28 7.9
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_35115| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 28 7.9
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKELNGM 555
TK+++G+L D E+ F +G + + + RN + F D D DA++EL+G
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGR 91
Query: 556 MVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
+ GQ ++V+L+ R RP MG E+CY CGR GH++
Sbjct: 92 YICGQRVRVELAKGPSRGRPRMGSNEKCYECGRVGHFA 129
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 321
K++IG+L D ++ ++ F YG + + + RN + F ++ + +A++ L+G
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRY 92
Query: 322 VHGQAIKIEAAK 357
+ GQ +++E AK
Sbjct: 93 ICGQRVRVELAK 104
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKELNGM 555
+++++GN+ D E+ F+ FG + + + RN + F + D DA++EL+G
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 556 MVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
+ GQ +V+L+ R RP E+CY CGR GH++
Sbjct: 62 YICGQRARVELAKGPSRGRPRQASNEKCYECGRVGHFA 99
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 62.5 bits (145), Expect = 3e-10
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQ 303
T +F+GNL + DLR FEK+G V++ DI R Y FV + V +A
Sbjct: 236 TRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKC 295
Query: 304 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
+ G+ + IKI +S++ TT+++VG L PE+ F +FG + D
Sbjct: 296 AMQGQCIGRNHIKIGYGRSQQ-----TTRLWVGGLGPWISIPELEREFDRFGAIRRIDYR 350
Query: 484 R--NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRG 657
+ ++ ++ D+ + A +E+ G + + +++ + + GM D + + GR
Sbjct: 351 KGGDHAYILYDSLDAASVAAREMRGFQMGDRRLRIDFAD----KEQGMKDYDPSFYGGRR 406
Query: 658 G 660
G
Sbjct: 407 G 407
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 60.5 bits (140), Expect = 1e-09
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGREA 297
PG T +F+GN+ TT DL+ FE+YG V++ DI + Y FV +A
Sbjct: 245 PGC-TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQA 303
Query: 298 IQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 477
+ ++ E V +K+ K P I+VG +T+ +V F ++G V +
Sbjct: 304 RRKMDREYVGRNRVKVGFGK-----VNPINTIWVGGVTNSLSEQQVERHFGRYGRVTKVV 358
Query: 478 I--VRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 609
I V N V D+ A ++ G + + ++V+ + RQ
Sbjct: 359 INRVTNQALVSFDSVDSATIAHAQMKGRTMFSRRVRVEFVSRESRQ 404
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 KIFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 327
+IFIGNL+ DK DL +F ++G V+ C + N+GFV E E+ EA+ +G +++
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEAVAKEHGRIIN 106
Query: 328 GQAIKIEAAKSR 363
G+ I + SR
Sbjct: 107 GKKIDVRIVNSR 118
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 358 SRKAPSTPTTKIFVGNL-TDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDA 534
++ P + +IF+GNL TDK ++ E+F + G V+ C + N+GFV + ++A
Sbjct: 37 NKNDPHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEA 96
Query: 535 IKELNGMMVDGQPMKVQLSTSR 600
+ + +G +++G+ + V++ SR
Sbjct: 97 VAKEHGRIINGKKIDVRIVNSR 118
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/162 (22%), Positives = 83/162 (51%), Gaps = 18/162 (11%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 330
++++G L TTE D+R F YG + + ++ NYGFV E+++ +A+ NG+ + G
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGKEMLG 63
Query: 331 QAIKIEAAK--SRKAPSTPTT-------------KIFVGNLTDKTRAPEVRELFQKFGTV 465
+ I +E ++ +R + S P+ ++ + NL+ + ++++ ++ G V
Sbjct: 64 ERILVEHSRGGARSSSSRPSRGRDKYGPPVRTPWRMTIENLSSRVSWQDLKDFCRQVGDV 123
Query: 466 VECDIVR---NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
D + G + D+ A+K+L+G ++G+ +++
Sbjct: 124 TYGDAHKQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDG 567
++++G L T +VR F+ +G + + ++ NYGFV + D +DA+ E NG + G
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGKEMLG 63
Query: 568 QPMKVQLSTSRVR---QRPGMG 624
+ + V+ S R RP G
Sbjct: 64 ERILVEHSRGGARSSSSRPSRG 85
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 57.6 bits (133), Expect = 9e-09
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+ I + ++ D++ +F G V C ++R+ Y FV+ +N +A++ +
Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREM 88
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-- 483
NG + + +K+ A+ + +++ L + EV LF+ FG ++ ++
Sbjct: 89 NGARLQNKTLKVSFARP-SSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKD 147
Query: 484 -----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
R GFV D + AI +LN + G +K+
Sbjct: 148 VSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTV--VECDIVRNYGFVHMENEQVGREAIQNLNGELVH 327
IF+ L + T L LF YG + +E + + YGFV+M N + AI LNG H
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNGTPQH 333
Query: 328 GQ 333
G+
Sbjct: 334 GK 335
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVN 528
S T + + + +++++F G V C ++R+ Y FV+ D D N
Sbjct: 23 SDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDAN 82
Query: 529 DAIKELNGMMVDGQPMKVQLS 591
A++E+NG + + +KV +
Sbjct: 83 KAVREMNGARLQNKTLKVSFA 103
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 56.8 bits (131), Expect = 1e-08
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+ + + T+ R +FE ++ C IVR+ +GFV + ++AI L
Sbjct: 49 LIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKL 108
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 489
NG + + +K+ A +T ++V N+ + E R+ F+ +G +V C ++R+
Sbjct: 109 NGFTIGNKVLKV-AFSRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRD 167
Query: 490 --------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 588
GFV D + AI L+G G M +Q+
Sbjct: 168 KSTGLPKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQI 208
Score = 36.7 bits (81), Expect = 0.017
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+++ N+ + EA+ R FE YG +V C ++R+ GFV + + + AI +L
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 310 NGELVHG--QAIKIEAAKSRKAPSTPTTKI 393
+G G ++I A A P +
Sbjct: 195 SGTFFPGSTMGLQIRYADDNSAKVRPPNNV 224
Score = 35.1 bits (77), Expect = 0.052
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Frame = +1
Query: 346 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFV 501
E +++++ +T ++TD+T R +F+ ++ C IVR+ +GFV
Sbjct: 38 EPQEAQESKTTLIVNYIPQDMTDQT----FRMMFEAVASLNNCKIVRHKPSGWSYGFGFV 93
Query: 502 HLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
+ T D AI +LNG + + +KV S
Sbjct: 94 DYNTTEDAQKAIDKLNGFTIGNKVLKVAFS 123
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 53.6 bits (123), Expect = 1e-07
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
I++G L +K +EA + LF + G VV + ++ YGFV E+ AI+ +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV------- 468
N V+G+ I++ A + +F+GNL + + + F FG ++
Sbjct: 75 NMIKVYGKPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMR 134
Query: 469 ECDIVRNYGFVHLD-ATGDVND-AIKELNGMMVDGQPMKV 582
+ D + GF ++ A+ D +D AI+ +NG + +P+ V
Sbjct: 135 DSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITV 174
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 546
I+VG L +K + ELF + G VV + ++ YGFV D + AIK +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 547 NGMMVDGQPMKVQLSTS 597
N + V G+P++V +++
Sbjct: 75 NMIKVYGKPIRVNKASA 91
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 53.6 bits (123), Expect = 1e-07
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLN 312
KIFIG L+ TTE L+ F ++GT+V+C I+ R +GFV E+ E ++
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVLKK-K 109
Query: 313 GELVHGQAIKIEAAKSRKAPSTP-----TTKIFVGNLTDKTRAPEVRELFQK------FG 459
++ + I+ + + R P T KIFVG L T +++E F G
Sbjct: 110 DHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMG 169
Query: 460 TVVECDIVRN 489
V++ D+ R+
Sbjct: 170 EVIDVDLKRD 179
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Frame = +1
Query: 358 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATG 519
S+ + S KIF+G L T +++ F ++GT+V+C I+ R +GFV +++
Sbjct: 41 SKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSD 100
Query: 520 DVNDAIKELNGMMVD 564
VN+ +K+ + ++ D
Sbjct: 101 SVNEVLKKKDHVLDD 115
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 130 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL 309
M GT ++F+G LS +T DL +F YG ++ CD+ YGF+ E+ + EA++
Sbjct: 1 MASRGT-QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMRRE 59
Query: 310 NGELVHGQAIKIEAAKS 360
N + G I +E +S
Sbjct: 60 NNRKLFGSRIVVEYVRS 76
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 564
T++FVG L+ +T+ ++ +F +G ++ CD+ YGF+ + D +A++ N +
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMRRENNRKLF 65
Query: 565 GQPMKVQLSTSRVRQRP--GMGDP----EQCYRCGRGG 660
G + V+ S R +P G P ++C CG+ G
Sbjct: 66 GSRIVVEYVRSGERGKPVGGQTRPTVVGDECLVCGKLG 103
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKELNG 552
TTK++VGNL + E+ F+KFG + + + RN + FV + D +A++EL+G
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDG 62
Query: 553 MMVDGQPMKVQLSTSRVRQRPGMGDP 630
V + ++V+ S +R + G G P
Sbjct: 63 ANVCDRTIRVEFSNNRGGRDRGGGRP 88
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNG 315
T K+++GNL ++L FEK+G + + + RN + FV E+ + EA++ L+G
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDG 62
Query: 316 ELVHGQAIKIEAAKSR 363
V + I++E + +R
Sbjct: 63 ANVCDRTIRVEFSNNR 78
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 52.0 bits (119), Expect = 4e-07
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYG----TVVECDIV----RNYGFVHMENEQVGREAIQN 306
K+F+G L+ +TT LR FE YG VV CD R +G+V + +V R +++
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKD 74
Query: 307 L--NG-ELVHGQAIKIEAAKSRKAPST----PTTKIFVGNLTDKTRAPEVRELFQKF--G 459
NG + G+ ++++ A R S T KIFVG L + +++E +
Sbjct: 75 KVENGAHRIDGKEVEVKRAIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQEAIESLLEE 134
Query: 460 TVVECDIV---------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
V + D++ R + FV L+ D D + + + V G+ ++ + +T R R
Sbjct: 135 KVDKVDLIMKKEDETKHRGFAFVELN-NEDQADELCCVKKIHVKGKMVEAKKATPRDRNS 193
Query: 613 PGMGDPEQCYRCGRGG 660
P G GRGG
Sbjct: 194 PADGGRGGYGGRGRGG 209
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/170 (20%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
++++G+++ + E +R F +G + + D+ + + FV + + + A++
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQ 162
Query: 307 LNGELVHGQAIKIEAAKS--RKAP--------STPTTKIFVGNLTDKTRAPEVRELFQKF 456
+NG L+ G+ IK+ + + AP + +I++ ++ +++ +F+ F
Sbjct: 163 MNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAF 222
Query: 457 GTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
G VV C + + YGF+ + NDAI +N + GQ ++V
Sbjct: 223 GKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
+I+I ++ E D++ +FE +G VV C + + YGF+ EN+Q +AI +
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 307 LNGELVHGQAIKIEAA 354
+N + GQ +++ A
Sbjct: 260 MNLFDLGGQFLRVGRA 275
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 50.4 bits (115), Expect = 1e-06
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Frame = +1
Query: 130 MPGTGTFKI-----FIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHM 270
+P TG K+ +I L TT+ DL L KYGT++ + ++ + YGFV
Sbjct: 89 LPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDF 148
Query: 271 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 450
E+ ++A+ LV+ + I+ + AK ++ T +++ NL + +F
Sbjct: 149 ESPISAQKAV----AALVN-KGIQAQMAKQQE---QDPTNLYIQNLPQNCDEAMLENMFS 200
Query: 451 KFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDG--QPMKVQLSTSRV 603
K+G V+ I+R+ GF +++ IK+ N M+ G Q + V+ +
Sbjct: 201 KYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFNKKMLPGCIQELVVKFADGGP 260
Query: 604 RQRPG 618
++R G
Sbjct: 261 KKRQG 265
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Frame = +1
Query: 124 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 279
+K+ G + + L TTE++++ F ++G + C++ R +GFV + +
Sbjct: 107 TKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKD 166
Query: 280 QVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 459
+ + + + G+ ++ + ++ + P K+FVG L + T + E F +FG
Sbjct: 167 EDAKNVLST--SHRIQGRLCEVRLPRPKEELNVPK-KLFVGRLPESTTEKTLMEYFAQFG 223
Query: 460 TVVECDI---VRNYGFVHLDATGD-VNDAIKELN 549
V + I R++GFV + + V+ A + +N
Sbjct: 224 EVTDVYIPKPFRHFGFVTFASVANCVSIAFENMN 257
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 543
K+++GNL + E+ + F++FG V + DI+R+ +GFV L + + AI++
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 544 LNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
+N V G+ + V L+ + R G G E+ R G GG+
Sbjct: 69 MNQSSVGGRNITVALALDKTENRGGGGRRERGGRGGGGGY 108
Score = 36.3 bits (80), Expect = 0.023
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K++IGNL+ + E ++ FE++G V + DI+R+ +GFV +++ AI+
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 307 LNGELVHGQAIKIEAA 354
+N V G+ I + A
Sbjct: 69 MNQSSVGGRNITVALA 84
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 36.7 bits (81), Expect(2) = 2e-06
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-YGFVHMENEQV 285
+ + K+F+G + E DLRP+FE YG + E I+++ Y H ++ ++
Sbjct: 167 SNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKDDRKL 216
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 252
K+F+G +S E DLR +F +GT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
Score = 32.7 bits (71), Expect(2) = 2e-06
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 489
K+FVG ++ + ++R +F FGT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 297
G +++ NLS T ADL+ F +YG VV IV N +G V M + +
Sbjct: 347 GGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKC 406
Query: 298 IQNLNGELVHGQAIKIEAAKSRKAPST--PTTKIFVGNLTDKTRAPE 432
IQ+L+ +HG+AI ++ AK + T +K G DK + E
Sbjct: 407 IQHLHRTELHGRAITVDRAKGDRVSQTQGSASKKTPGKAADKKGSAE 453
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 309
+F+GN+ + +E L+ +F + G V+ +V + YGF ++++ A++NL
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 310 NGELVHGQAIKIEAAKSRK 366
NG ++G+A+++++A S K
Sbjct: 87 NGYELNGRALRVDSAASEK 105
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = +1
Query: 355 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 510
+S A +FVGN+ + +++E+F + G V+ +V + YGF
Sbjct: 15 QSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYK 74
Query: 511 ATGDVNDAIKELNGMMVDGQPMKVQLSTS 597
A++ LNG ++G+ ++V + S
Sbjct: 75 DQETALSAMRNLNGYELNGRALRVDSAAS 103
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 48.4 bits (110), Expect = 5e-06
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
+F+G L+ T E L+ FE++G V I+ RNYGFV +++ +E ++
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLK--K 139
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 489
+++G+ ++ KSR I+VG L VRE F+KFG + + N
Sbjct: 140 SHVINGKT--VDVGKSRN-----FRVIYVGGLPSHFTEQTVREHFKKFGVIEAVKFIEN 191
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKE-- 543
+FVG L T +++ F++FG V I+ RNYGFV G + +K+
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLKKSH 141
Query: 544 -LNGMMVD 564
+NG VD
Sbjct: 142 VINGKTVD 149
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 118 P*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 246
P + G +F+ NLS+ T E D+ F YG V + I+
Sbjct: 309 PNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHIL 351
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 48.0 bits (109), Expect = 7e-06
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
K ++GNL K ++++ F ++ VV+ ++ R + FV + ++ DAI E
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYD-VVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINE 289
Query: 544 LNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 660
L+G DG+ MKV + SR ++ G G YR G GG
Sbjct: 290 LDGQEFDGRSMKVNQARSREQRGGGRGGG---YRSGGGG 325
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K +IGNL K EADL+ F +Y VV+ ++ R + FV +++ +AI
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINE 289
Query: 307 LNGELVHGQAIKIEAAKSRK 366
L+G+ G+++K+ A+SR+
Sbjct: 290 LDGQEFDGRSMKVNQARSRE 309
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
R +GFV + +++ AI + +G +DG+PMKV + R +R G G YR G GG+
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPR-GERGGGGSQGGGYRSGGGGY 108
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 247 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSR 363
R +GFV +E +AI +GE + G+ +K+ A+ R
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPR 88
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 47.6 bits (108), Expect = 9e-06
Identities = 36/184 (19%), Positives = 78/184 (42%), Gaps = 31/184 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
+++ N D + ++ + + G +V ++ + +GFV E + EA+ LN
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
Query: 313 GELVHGQAIKIEAAKSRKAPSTPT-----------------TKIFVGNLTDKTRAPEVRE 441
G+ + G+ + AK R + +++ NL D +RE
Sbjct: 171 GKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLRE 230
Query: 442 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
F +GT+ ++++ +GFV + + A+ E+NG ++ +P+ V L+ R
Sbjct: 231 EFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRR 290
Query: 601 VRQR 612
++
Sbjct: 291 EERK 294
Score = 44.0 bits (99), Expect = 1e-04
Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVE---C-DIV--RNYGFVHMENEQVGR----EAIQ 303
+++G+L+ TEA L F G+V+ C D+V R+ G+ ++ +Q G EAI
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAIA 74
Query: 304 NLNGELVHGQAIKIEAAKSRKAP-----STPT--TKIFVGNLTDKTRAPEVRELFQKFGT 462
++G L++ + + + S+K + P T ++V N D +++E+ + G
Sbjct: 75 RVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGK 134
Query: 463 VVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQ 570
+V ++ + +GFV + + +A+ LNG + G+
Sbjct: 135 IVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGR 177
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 46.0 bits (104), Expect = 3e-05
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 330
K+F+G LS +TT+ L+ F KYG +V DI + + G +Q +
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMD----ALTGRPRGFAFVQFKHQSEADA 85
Query: 331 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQK-FGTVVECDIV-------- 483
K AA K P KIFVG L +T ++RE F K + V E + +
Sbjct: 86 IDPK-PAAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRR 144
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 585
R + FV D+ D D I E ++G ++V+
Sbjct: 145 RGFCFVSFDSE-DTVDKICETQFHNIEGNKVEVK 177
Score = 34.3 bits (75), Expect = 0.091
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 316 ELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 480
E V+G +++ K+R K+FVG L+ +T ++E F K+G +V DI
Sbjct: 5 EAVNGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDI 60
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLN 312
TG ++F+GNL D E +++ +F+KYG V E I + +GF+ ++ A L+
Sbjct: 50 TGRCRLFVGNLID-CDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLDTRLHAEAAKAGLD 108
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG----TVVECDI 480
G+ +++ A T + V NL + + + F +FG VV CD+
Sbjct: 109 MATRKGRTLRVRFA-------THAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDV 161
Query: 481 ---VRNYGFVHLDATGDVNDAIKELN 549
+ +G V + ++A+++++
Sbjct: 162 RGRSKGHGIVEFSRKNNAHNAMQKIS 187
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQ 333
I++ N+ +E L+ +F KYG + + +R+YGFV+ + +AI +NG + G
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGINGAYIDGC 63
Query: 334 AIKIEAA 354
+++ A
Sbjct: 64 KLEVSLA 70
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQ 570
I+V N+ +++ +F K+G + + +R+YGFV+ AI +NG +DG
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGINGAYIDGC 63
Query: 571 PMKVQLS 591
++V L+
Sbjct: 64 KLEVSLA 70
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +1
Query: 421 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
R +V + + +G + + + R YGFV D D DA+ +LNG + G+ + V+ S R
Sbjct: 701 RESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGR 760
Query: 601 VRQRPGMGDPEQCYRCGRGG 660
+ G + R GR G
Sbjct: 761 RSEGGGRDRRDFSGRGGRDG 780
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = +1
Query: 187 EADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 366
E+D+ YG + + + R YGFV ++ + +A+ +LNG + G+ + +E +K R+
Sbjct: 702 ESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGRR 761
Query: 367 A 369
+
Sbjct: 762 S 762
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR---NYGFVHMENEQVGREAIQ 303
P + + + NLS +T+ DL+ F KYG V D + G V E++ AI+
Sbjct: 793 PVRTNYSVIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIE 852
Query: 304 NLNGELVHGQAIKI 345
L+ + G+ I++
Sbjct: 853 KLDDTELGGRRIRV 866
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVG 288
PG +FI +L + T+ADL F+ +GTV+ + ++ + +GFV +N
Sbjct: 272 PGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSA 331
Query: 289 REAIQNLNGELVHGQAIKIEAAKSRKA 369
+ AIQ++NG + + +K++ + + A
Sbjct: 332 QNAIQHMNGFQIGAKRLKVQLKRPKDA 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Frame = +1
Query: 355 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 510
+S P + +F+ +L + ++ + FQ FGTV+ + + +GFV D
Sbjct: 267 ESHYTPGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYD 326
Query: 511 ATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRP 615
+AI+ +NG + + +KVQL + RP
Sbjct: 327 NVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRP 361
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 44.8 bits (101), Expect = 6e-05
Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 39/220 (17%)
Frame = +1
Query: 118 P*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENE 279
P +P +F+GNLS E L FE+ G C ++ R +G+ ++
Sbjct: 170 PKKTVPAKEEMSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSK 229
Query: 280 QVGREAIQNLNGELVHGQAIKIEAAKSR-------------------------KAPSTPT 384
+ +A++ LNGE G+ I+I A S+ + + P
Sbjct: 230 EDYNKALE-LNGEDCCGREIRINPANSKPSRGGGNTPRGGGRGRGGRGGFSGGRDQNPPN 288
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVV-----ECDIVRNYGFVHLDATGDVNDAIKELN 549
+ + V NL+ T + F+ E R +GFV D + E+
Sbjct: 289 SSLIVRNLSYDTTTDSLGAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMA 348
Query: 550 GMMVDGQPMKVQLSTSRVR---QRPGMGDPEQCYRCGRGG 660
G VDG+ +++ ++ R + G G +R GRGG
Sbjct: 349 GAEVDGRQVRLDFASPRTEGGGRGGGRGGGRGGFRGGRGG 388
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 44.4 bits (100), Expect = 9e-05
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 26/175 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHME-NEQVGREAIQNLN 312
+F L+ DL F K G V + I+ R+ G ++E ++ L+
Sbjct: 148 VFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLS 207
Query: 313 GELVHGQAIKI---EAAKSR--------KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 459
G+ + G I + +A K+R K P PT +++VG+L V+ +F+ FG
Sbjct: 208 GQKLLGAPIMVMLTQAEKNRLAAEAERLKQPLGPT-RLYVGSLHFNITEAMVKAVFEPFG 266
Query: 460 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
TV ++ + YGFV A++++NG + G+P+K+ T R
Sbjct: 267 TVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTER 321
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREA 297
G ++++G+L TEA ++ +FE +GTV ++ + YGFV + + A
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
Query: 298 IQNLNGELVHGQAIKIEAAKSR 363
++ +NG + G+ +KI R
Sbjct: 300 MEQMNGFELAGRPLKIGPVTER 321
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQ 333
+++ NLS TE L+ + +YG V +++Y FVH +AI+ +G+ + G
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHALKAIEETDGKEMDG- 389
Query: 334 AIKIEAAKSRKAP 372
+KIEA+ ++ P
Sbjct: 390 -LKIEASLAKPQP 401
Score = 42.3 bits (95), Expect = 3e-04
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Frame = +1
Query: 247 RNYGFVHMENEQVGREAIQNL-NGEL-VHGQ-AIKIEAAKSRKAPSTPTTK----IFVGN 405
R + F+ E+ Q A + L +G + V G + ++ A ++ P K +++ N
Sbjct: 276 RGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDDAMKKVKVVYLRN 335
Query: 406 LTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 585
L+ +++E + ++G V +++Y FVH AI+E +G +DG ++
Sbjct: 336 LSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEAS 395
Query: 586 L------STSRVRQRPGMGDPEQCYRCGRGG 660
L + R R + G G R GRGG
Sbjct: 396 LAKPQPGNKDRQRGQSGFGSLNS-RRGGRGG 425
Score = 34.7 bits (76), Expect = 0.069
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Frame = +1
Query: 127 KMPGTGTFKI----FIGNLSDKTTEADLRPLFEKYGTVVE--------CDIVRNYGFVHM 270
K PGTG+ K+ FIG + E +L P+FE+ G + + + + + F
Sbjct: 141 KPPGTGSEKVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTF 200
Query: 271 ENEQVGREAIQNL-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELF 447
N+ + A++ L N E+ G+ + + S +++FVG++ E+ E F
Sbjct: 201 SNKDEAQNAVKKLDNKEIRPGKRLGV-------CISVANSRLFVGSIPKTKSKQEILEEF 253
Query: 448 QK 453
K
Sbjct: 254 SK 255
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Frame = +1
Query: 367 APSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGD 522
APS T ++VGNL ++ ++F+++G VV+ I+R+ F+
Sbjct: 6 APSKST--VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQS 63
Query: 523 VNDAIKELNGMMVDGQPMKVQLSTSRVR-----QRPGMGDPEQCYRCGRGGHWS 669
+A+ +N + G+ +K ++ R +R D +CY CG GGH S
Sbjct: 64 AQNAVAAVNKKQMFGRTIKCTIAKDNGRAPEFIRRRDYPDKSRCYECGEGGHLS 117
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+++GNL T +DL +FE+YG VV+ I+R+ F+ + Q + A+ +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 310 NGELVHGQAIKIEAAKSR-KAP 372
N + + G+ IK AK +AP
Sbjct: 72 NKKQMFGRTIKCTIAKDNGRAP 93
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHMENEQVGREAIQNLNG 315
+++GNL K T+ + +F K VV C ++ + Y FV E +EA ++
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQ 430
Query: 316 ELVHGQAIKIEAAKSRKAPSTPTTK----IFVGNLTDKTRAPEVRELFQKFGTV 465
V + +K+ A + T IFVG+L + +R+ F+ FG +
Sbjct: 431 RTVMDKKLKVNWATNHPGMKRGDTNNHFHIFVGDLAENVDNALLRKTFEPFGEI 484
Score = 35.5 bits (78), Expect = 0.039
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 355 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN------YGFVHLDAT 516
++R P ++VGNL K + +F K VV C ++ + Y FV +
Sbjct: 359 RARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETH 418
Query: 517 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPG 618
D +A ++ V + +KV +T+ + G
Sbjct: 419 ADAQEAKFRMDQRTVMDKKLKVNWATNHPGMKRG 452
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQ 282
+++GNL + +L+ +F +YG+++E + + Y F++ E+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINARGEK 661
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 41.9 bits (94), Expect = 5e-04
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = +1
Query: 43 GNSWSLFGV-HIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKY 219
GN W + + C F N KM +F ++IG LS+ TE L LF K+
Sbjct: 490 GNDWLFRQLPSLQGPCIAFWVFQEVNEGFKM--AASFPVWIGGLSEDVTENVLLELFNKF 547
Query: 220 GTVVECDIVRNY-------GFVHMENEQVGREAIQNLNGELVHGQAIKIEAAK 357
G V + I+R+ GFVH + V A +NG + G+ ++ + AK
Sbjct: 548 GPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMNGCDILGKIVETKYAK 600
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG------FVHMENEQVGREAIQNLN 312
++++GNL E DL +F KYG + + D+ G FV E+ + +A++ +
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 313 GELVHGQAIKIE 348
G G I++E
Sbjct: 322 GHEFDGYRIRVE 333
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG------FVHLDATGDVNDAIKELN 549
+++VGNL R ++ ++F K+G + + D+ G FV + D DA+K +
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 550 GMMVDGQPMKVQ 585
G DG ++V+
Sbjct: 322 GHEFDGYRIRVE 333
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 327
I++G+L+ T+ L+ +FE++GT+ D++ R ++ ME + A+ L ++
Sbjct: 543 IWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKREDAYRALDKLRNIKLY 602
Query: 328 GQAIKIEAAKSR 363
G ++K+ A ++
Sbjct: 603 GNSVKLAWAPAK 614
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +1
Query: 355 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD--------IVRNYGFVHLD 510
+ +++P+ TK++V +LT V+E+F +G V D + R + +V
Sbjct: 1147 RRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYV 1206
Query: 511 ATGDVNDAIKELNGMMVDGQPMKVQ 585
+ A+K ++G +DGQ + VQ
Sbjct: 1207 DPEECEKALKHMDGGQIDGQEIAVQ 1231
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 309
+IF+ + +TTE++LR FE+YG V E IVR+ Y F+ E+++V + +++
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQEVA-DGLRDN 67
Query: 310 NGELVHGQAIKIEAAKSRKA 369
G + + I A RK+
Sbjct: 68 KGLDFKDKVLSIGQAVRRKS 87
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 546
+IFV +T E+R F+++G V E IVR+ Y F+ ++ +V D +++
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQ-EVADGLRDN 67
Query: 547 NGMMVDGQPMKVQLSTSRVRQR 612
G+ + + + + R R
Sbjct: 68 KGLDFKDKVLSIGQAVRRKSSR 89
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGT--VVECDIVRNYGFVHLDATGDVNDAIKELNGM 555
+ ++++G L TR +V++ F +G + E + YGFV D + D DA+ E NG
Sbjct: 2 SNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNGK 61
Query: 556 MVDGQ 570
+ G+
Sbjct: 62 KMLGE 66
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRNYGFVHMENEQVGREAIQNLNGELV 324
++++G L T E D++ F YG + E + YGFV + +A+ NG+ +
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNGKKM 63
Query: 325 HGQ 333
G+
Sbjct: 64 LGE 66
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+F+ L+ TT+ DL +F ++GT++ C+++R+ Y F+ E ++ A +
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181
Query: 310 NGELVHGQAIKIEAAKS 360
+ L+ + I ++ ++S
Sbjct: 182 DNVLIDDRRIHVDFSQS 198
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +1
Query: 379 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 534
P +FV L T ++ +F +FGT++ C+++R+ Y F+ + D A
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERA 177
Query: 535 IKELNGMMVDGQPMKVQLSTS 597
+++ +++D + + V S S
Sbjct: 178 YFKMDNVLIDDRRIHVDFSQS 198
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 549
+FV NL + E+ ELF K G V + +V N YG+V + + A+ L+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 550 GMMVDGQPMKVQLSTSRVRQRP 615
V G+ + V LS R+ P
Sbjct: 233 KTEVKGRTISVALSNPPTRRGP 254
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = +1
Query: 289 REAIQNLNGELVHGQAIK--IEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEVRELFQKFG 459
R+A+ LNG+ + G +K IE+ +P + +++ + NL ++E F FG
Sbjct: 212 RQAVAKLNGKTLKGVKVKAVIESKDKSSSPKGSKKSRLIIRNLAFNCTEAILKETFSAFG 271
Query: 460 TVVECDIV------RN----YGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
V E + RN +GFV D A++E+N + G+P+ V
Sbjct: 272 EVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRPVAV 322
Score = 33.1 bits (72), Expect = 0.21
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Frame = +1
Query: 346 EAAKSRKAPSTPT---TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YG 495
+A+ S+KA TP T IFV NL E + F++ G + IV++ G
Sbjct: 4 KASPSKKASKTPVISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRG 63
Query: 496 FVHLDATGDVNDAIKELNGM-MVDGQPMKVQLSTSRVRQRPG 618
F ++ + DA+K + + + G+P+ + S + R +PG
Sbjct: 64 FGYVTFALE-EDALKAKDNIKSIKGRPIHLDFSEKKARTKPG 104
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 246
+FI NLS +T+ ++ LF+++G + C +V
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVV 448
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Frame = +1
Query: 124 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV---------RNYGFVHMEN 276
SK P IF+ NL T+A+ + FE+ G + IV R +G+V
Sbjct: 12 SKTPVISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFAL 71
Query: 277 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 381
E+ +A N+ + G+ I ++ ++ +KA + P
Sbjct: 72 EEDALKAKDNIKS--IKGRPIHLDFSE-KKARTKP 103
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
R +GFV + ++ AI E +G DG+PMKV + R + G G YR G GG+
Sbjct: 45 RGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGAG-GSRAGGYRSGGGGY 103
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMV 561
+T+++ G L R ++ + + +G V E + YGFV D D +D + +LNG +
Sbjct: 4 STRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNGRNL 63
Query: 562 DGQ 570
G+
Sbjct: 64 LGE 66
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 330
+++ G L E DL YG V E + YGFV ++ + + + +LNG + G
Sbjct: 6 RVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNGRNLLG 65
Query: 331 Q 333
+
Sbjct: 66 E 66
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
R +GFV + ++ AI E +G +DG+PMKV + R G G YR G GG+
Sbjct: 137 RGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPR-GDSGGGGSQGGGYRSGGGGY 195
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYG-TVVECDIV---------------RNYGFVHMENEQ 282
K++ GNL K T+ +L+ +FE TV + IV R +GFV N +
Sbjct: 51 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110
Query: 283 VGREAIQNLNGELVHGQAIKIEAAKSR 363
+ A+++LNG+ V G+ +KI + SR
Sbjct: 111 DAQTAVKSLNGKEVQGRTLKIAPSISR 137
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCG-RGG 660
R +GFV D A+K LNG V G+ +K+ S SR R G G YR G RGG
Sbjct: 99 RGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSISRGRDGGG-GGYRGGYRGGYRGG 157
Query: 661 H 663
+
Sbjct: 158 Y 158
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +1
Query: 169 LSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIE 348
LS TTE DLRP+FEKYG V IV ++ +A + G + G+ I+++
Sbjct: 188 LSLYTTERDLRPVFEKYGPVEAIQIVYDH------------QAKERTTGIELDGRRIRVD 235
Query: 349 AAKSRKAPSTPTTKIFVG 402
+ +++A TPT +++G
Sbjct: 236 YSVTKRA-HTPTPGVYMG 252
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRA----PEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV 525
+ K+F+ T+ ++ + + FQ FGTV+ + + +GFV D
Sbjct: 257 SAKVFIDKQTNMSKCFGECCRLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSA 316
Query: 526 NDAIKELNGMMVDGQPMKVQLSTSRVRQRP 615
+AI+ +NG + + +KVQL + RP
Sbjct: 317 QNAIQHMNGFQIGAKRLKVQLKRPKDANRP 346
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 243
PG +FI +L + T+ADL F+ +GTV+ +
Sbjct: 224 PGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 196 LRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEA 351
L F+ +GTV+ + + +GFV +N + AIQ++NG + + +K++
Sbjct: 278 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 337
Query: 352 AKSRKA 369
+ + A
Sbjct: 338 KRPKDA 343
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 36.7 bits (81), Expect = 0.017
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Frame = +1
Query: 256 GFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEV 435
G+V + + +AI + NGE + G I+++ A + KA + +F+GNL +
Sbjct: 15 GYVVYKAAENANQAIAS-NGEEIDGFHIRVDLASNDKAHDHQRS-VFIGNLPFDIEEEPL 72
Query: 436 RELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
RELF G V ++R+ +G+V ++ V A+K +N G+ ++V
Sbjct: 73 RELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALK-MNNAEFKGRKIRV 128
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+FIGNL E LR LF G V ++R+ +G+V E++ A++
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMN 117
Query: 310 NGELVHGQAIKIEAAKSR 363
N E G+ I++ +K +
Sbjct: 118 NAEF-KGRKIRVFPSKDK 134
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVND 531
T TK+FVG + ++ +R+ F +FG + E ++++ YGFV + AT D +
Sbjct: 7 TKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTM-ATSDAAE 65
Query: 532 AIKELNGMMVDGQPMKVQLSTSRVRQRPGMG 624
+ M++G+ V L+ + +P G
Sbjct: 66 LACKNKRPMIEGRQANVNLAYLGAKPKPTRG 96
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Frame = +1
Query: 334 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------- 489
++ + S P +P KIF+G L + +V+EL FG + ++V++
Sbjct: 657 SVHVPGVVSTVVPDSPH-KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKG 715
Query: 490 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 609
Y F G + AI+ LNGM + + + VQ ++ +Q
Sbjct: 716 YAFCEYVDLGITDVAIQGLNGMQLGDKKLIVQRASVGAKQ 755
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +1
Query: 157 FIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLN 312
++G L+++ E L F +G + + I R +GFV E + AI N+N
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 313 GELVHGQAIKIEAAKSRK 366
+ G+ I++ AK K
Sbjct: 68 ESELFGRTIRVNLAKPMK 85
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVE 234
++FIGNL +AD+ +F KYGT++E
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE 385
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 358 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 471
+R AP + ++F+GNL + +V E+F K+GT++E
Sbjct: 350 ARSAPDSH--QVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 34.7 bits (76), Expect = 0.069
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI------------VRNYGFVHMEN-EQVGR 291
K+F+G L++ TTE +R F+ + E D+ R + FV N +
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFVEFSNGSDIID 68
Query: 292 EAIQNLNGELVHGQAIKIEAAKSRKAPS----TPTTKIFVGNLTDKTRAPEVR 438
+ N + + ++++ A R P+ T K+F+G L D+ +V+
Sbjct: 69 NIVFNFESHSIDNKQVEVKRAMPRDDPNELAHVRTKKLFIGGLKDEHSEEDVK 121
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
K+FVGN+ K RA E+++ F FG VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 246
K+F+GN+ K +L+ F +G VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAI-QNLNGELV 324
+++G L K TE DLR F ++G + +V +N FV + A ++ N ++
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADRSFNKLIL 365
Query: 325 HGQAIKIEAAKSRKAPSTP 381
G+ +KI KS+ P
Sbjct: 366 KGRRLKIMWGKSQGQQPAP 384
Score = 32.3 bits (70), Expect = 0.37
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Frame = +1
Query: 343 IEAAKSRKAPSTPT----TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 504
++ A+S TPT T ++VG L K ++R+ F +FG + +V +N FV
Sbjct: 286 LKQAQSMPMLDTPTDRSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVC 345
Query: 505 LDATGDVNDAI-KELNGMMVDGQPMKVQLSTSRVRQ-RPG 618
+ A + N +++ G+ +K+ S+ +Q PG
Sbjct: 346 FTSRAAAEAAADRSFNKLILKGRRLKIMWGKSQGQQPAPG 385
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 34.3 bits (75), Expect = 0.091
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGE 318
+ T ++ + L+ + E LR FEK+G + EC ++R+ V + G ++
Sbjct: 106 SSTLELSVIPLTQASAEG-LRQHFEKFGELKECVVMRDP--VTKRSRGFGFLTFKDPKAV 162
Query: 319 --LVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 465
+++ A +++ K T T KIF+G L+ T ++++ F +FG V
Sbjct: 163 DVVLNSGAQELDGKKM----VTTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 481 VRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 588
+ +GFV + + N A ++LNG +VDG+ ++V L
Sbjct: 123 IEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 196 LRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIE 348
L+ +F ++G +++ ++ RN+G+ +Q AIQ L+G V G +KI+
Sbjct: 354 LKDVFSRFGNLIDVWMMKERNFGYAKFAAKQSADAAIQGLHGHDVLGMKLKID 406
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 433 VRELFQKFGTVV------ECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 564
+R++F KFG +V E D+ R Y F+ D A+K NG +D
Sbjct: 94 IRKVFSKFGQIVTEHYPMEKDLTRGYIFLEFSNASDAVRAVKTANGYKLD 143
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 303
F+IF G+L + T+ L F KY + ++ IVR+ YGFV ++ +A++
Sbjct: 217 FRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMR 276
Query: 304 NLN 312
+N
Sbjct: 277 EMN 279
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTV 228
K+FIG L+ TTE DL+ F YG V
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 89 IYCYSLYIVTHNLKCRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCT 268
IYC S + V + APVL K + T +I+P P+ ++ N AI E+ +S T
Sbjct: 186 IYCASKFAVEGYAEAMAPVLGKFNIKTTIIEP-GPVATNFASNA----KAIRDEVDISGT 240
Query: 269 WKTNKSAAK 295
+ ++ K
Sbjct: 241 DEQTQALLK 249
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTV----VECD----IVRNYGFVHLDATGDVNDAIKEL 546
+FV N+ ++ + ++ ELF +G + V D ++ Y V + + A++ L
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 547 NGMMVDGQPMKV 582
NG + GQ + V
Sbjct: 355 NGAEMLGQNISV 366
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 583 QLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
++++ R RQ G + CYRCG GH+S
Sbjct: 1510 KVNSLRGRQEKEKGKGKHCYRCGMEGHFS 1538
>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
Length = 529
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 430 EVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMM 558
++R L+Q + V +CDI+ + + TGD +DA+K + GM+
Sbjct: 436 QLRALYQAYQHVAKCDILET---IDDELTGDYHDAVKAI-GML 474
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 433 VRELFQKFGTVVECDIVRN--YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 606
++E F G V + +N GFV D + AI E+NG+ V V + S R
Sbjct: 124 LKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGLKV----QHVHIRVSMAR 179
Query: 607 QRPGMGD 627
++P M +
Sbjct: 180 RQPNMDE 186
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 127 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAI 300
K+ +G +F+ + TE L+ F G V + +N GFV + + +AI
Sbjct: 103 KLIASGGKTVFVSGIG--LTEEILKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAI 160
Query: 301 QNLNGELVHGQAIKIEAAKSRKAPS 375
+NG V Q + I + +R+ P+
Sbjct: 161 DEMNGLKV--QHVHIRVSMARRQPN 183
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +1
Query: 247 RNYGFVHMENEQVGREAIQNLNGEL-----VHGQAIKIEAAKSRKA 369
RN+G+V +EQ +A++ + GE + G+A+ IE A+ +++
Sbjct: 17 RNFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRALNIEYAQEKES 62
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRP-LFEKYGTV-VECDIVRNYGFVHMENEQVGREAIQNLNGELV 324
K+ I L D DL+ +F+ Y + V+N V + R I LN
Sbjct: 40 KLVITGLPDNVDLQDLKSKIFQGYDVKDLVIGHVKNTATVVFGGIEQARSVISFLNTCKY 99
Query: 325 HGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 489
H + + + +P+ P + +FVGNL + + +L +G + +VR+
Sbjct: 100 HDKTLNV-------SPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRS 147
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +1
Query: 439 ELFQKFGTVVECDIVRNYG-------FVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
EL +K+G + E ++ N G +V D A+ +LN +GQP+ +LS
Sbjct: 90 ELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKAVNDLNNRWYNGQPIYAELS 147
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 10 FCSGV--RHVYCVGNSWSLFGVHIFNLCYILLFFVHSNP*SKMPGTG 144
F SG+ H+ W + +H+ N Y+L F S P ++ +G
Sbjct: 196 FSSGIYIHHLGYKATFWGILSLHLINFIYLLFFLPESMPKQRIEQSG 242
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 379 PTTKIFVGN--LTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 546
PT I VGN L + +F +GT+ ++ R+Y FV + + +A++ L
Sbjct: 46 PTPHILVGNGGLMCGVDRESITRVFSLYGTLERVVMLPQRSYSFVSYKSHNNALNAMRNL 105
Query: 547 NGMMVD 564
NG +D
Sbjct: 106 NGKALD 111
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
I++G++ E +++ FE++GTV + R+ Y FV ++V + A +
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 310 NGELVHGQAIK 342
+ ++ G+ +K
Sbjct: 160 HNYMMFGRLLK 170
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 300
T I + NLS++T E+DL+ LF G + + ++ + F++ + + AI
Sbjct: 180 TATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAI 239
Query: 301 QNLNGELVHGQAIKIEAAK 357
+ L+G + +E AK
Sbjct: 240 EVLSGFGYDHLILNVEWAK 258
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 309
++F+G + E +L P+FE G + E ++ R Y FV ++ + ++ L
Sbjct: 75 EVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRCVKTL 134
Query: 310 NG-ELVHGQAIKI 345
N E+ G+ I +
Sbjct: 135 NNYEIRKGKCIGV 147
>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
Length = 601
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 550 GMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
G VD P++ Q S V+ +CYRCGR GH S
Sbjct: 98 GGKVDTPPIEQQSGISNVKSEV------ECYRCGRKGHRS 131
>SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 550 GMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
G VD P++ Q S V+ +CYRCGR GH S
Sbjct: 456 GGKVDTPPIEQQSGISNVKSEV------ECYRCGRKGHRS 489
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 252
G + + NL+ +TT DL+ +F+KYG + + I R+
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRD 50
>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 583 QLSTSRVRQRPGMGDPE---QCYRCGRGGHWS 669
++ T V Q+ G+ + + +CYRCGR GH S
Sbjct: 178 KVDTPPVEQQSGISNVKSEVECYRCGRKGHRS 209
>SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 252
+ I NL E DL+ L + YG V+ C+I R+
Sbjct: 121 LIIQNLPKGIQEKDLKELLQLYGNVLVCNIERD 153
>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 568 QPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHW 666
QP Q +S +QRP C CG GHW
Sbjct: 1029 QPSYQQYGSSFGQQRPNEQQRGSCRCCGAPGHW 1061
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.3 bits (60), Expect = 6.0
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Frame = -3
Query: 566 PSTIIPFNSLIASFTSPVASKCTKP*LRTISHSTTVPNF*NSSRT--SGARVLSVK---L 402
PST +P+N+ + + ++ T +++ TT+ + + +R+ S + S+ L
Sbjct: 1107 PSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSML 1166
Query: 401 PTNILVVGVDGAFRLLAASILIACP*TNSPLRF*MASRPTCSFSMCTKP*FLTISHSTTV 222
P N V+ R LA S + + S + + T S+ + L I+ +TT+
Sbjct: 1167 PYNTTVIATPNTTR-LATSTISSSTVNVSAISTTSSIESTIMASVASSI-QLNITSNTTM 1224
Query: 221 PYFSNSGLRSASVVLSERFPMKILKVPVPGILDYGLLCT 105
N LR+ S S FP I P P I Y LL T
Sbjct: 1225 AV--NDTLRTTST--SAVFPTTI--TPSPNITSYPLLTT 1257
>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
Length = 700
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 550 GMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
G VD P++ Q S V+ +CYRCGR GH
Sbjct: 451 GGKVDTPPIEQQSGISNVKSEV------ECYRCGRKGH 482
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 616 GMGDPEQCYRCGRGGHWS 669
G G C++CG+ GHW+
Sbjct: 440 GGGQAGTCFKCGQEGHWA 457
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 631 EQCYRCGRGGHWS 669
E CYRCG+ GH++
Sbjct: 121 ESCYRCGKSGHFA 133
>SB_35115| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 196
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 523 VNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
+ + +++ ++ D Q L+ +RV++R CY CGR GH S
Sbjct: 107 LTEGLQKQQQVLADTQASLATLA-NRVQRREARWSDLTCYTCGRVGHIS 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,366,709
Number of Sequences: 59808
Number of extensions: 419167
Number of successful extensions: 1426
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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