Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b07
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 74 8e-14
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 73 1e-13
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 72 4e-13
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 71 7e-13
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 69 2e-12
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 69 2e-12
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 67 1e-11
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 67 1e-11
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 66 3e-11
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 65 3e-11
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 64 6e-11
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 64 6e-11
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 64 8e-11
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 64 8e-11
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 64 1e-10
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 63 2e-10
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 62 4e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 61 6e-10
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 61 7e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 60 1e-09
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 60 2e-09
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 59 2e-09
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 59 3e-09
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 57 9e-09
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 56 3e-08
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 56 3e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 54 7e-08
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 54 1e-07
At2g47310.1 68415.m05906 flowering time control protein-related ... 52 3e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 52 3e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 52 3e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 52 3e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 52 3e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 5e-07
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 51 6e-07
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 51 6e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 51 8e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 51 8e-07
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 50 1e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 50 1e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 50 1e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 50 1e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 49 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 49 2e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 49 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 4e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 48 4e-06
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 48 6e-06
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 48 7e-06
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 48 7e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 48 7e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 7e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 48 7e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 48 7e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 7e-06
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 47 1e-05
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 47 1e-05
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 47 1e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 47 1e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 47 1e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 2e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 46 2e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 46 2e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 2e-05
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 46 2e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 46 3e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 45 4e-05
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 44 7e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 7e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 7e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 44 7e-05
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 1e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 43 2e-04
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 43 2e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 3e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 3e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 42 3e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 42 5e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 5e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 5e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 41 6e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 41 9e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 41 9e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 9e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 0.001
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.001
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 40 0.002
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.003
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.003
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 38 0.005
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 38 0.005
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.005
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.005
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.006
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.006
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.006
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.006
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 0.008
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.008
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 37 0.011
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 37 0.011
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 37 0.011
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.014
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 37 0.014
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.014
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.014
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.014
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 37 0.014
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.014
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 36 0.018
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 36 0.018
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 36 0.018
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.024
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.024
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 36 0.024
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 36 0.024
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.024
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 36 0.032
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 36 0.032
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 36 0.032
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.032
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.032
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 31 0.039
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 35 0.043
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 35 0.056
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.056
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.056
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.074
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 34 0.074
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.074
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.074
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 34 0.098
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.098
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 34 0.098
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.098
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.098
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.098
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 34 0.098
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.13
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.13
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.13
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.13
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.13
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.13
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.13
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.13
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.17
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.30
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 32 0.30
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.30
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.30
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.40
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.40
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.40
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.40
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.52
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 31 0.69
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.92
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 31 0.92
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.92
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 1.2
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 30 1.2
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.2
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 1.6
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 1.6
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 1.6
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 30 1.6
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 29 2.1
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 29 2.1
At5g55820.1 68418.m06956 expressed protein 29 2.8
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 29 2.8
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 29 2.8
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 2.8
At2g38620.1 68415.m04744 cell divsion control protein, putative ... 29 2.8
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 3.7
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 3.7
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 3.7
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 28 6.5
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 28 6.5
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 8.5
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 27 8.5
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 27 8.5
At5g14690.1 68418.m01721 expressed protein predicted protein, Ar... 27 8.5
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 8.5
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 8.5
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 74.1 bits (174), Expect = 8e-14
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 31/184 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 313 G------ELVHGQAIK-----IEAAKSRKAPSTPT------TKIFVGNLTDKTRAPEVRE 441
G E G+A K +E ++ + S+ ++V NL D ++RE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 442 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
LF +FGT+ C ++R+ GFV A + + + E+NG MV G+P+ V L+ +
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 601 VRQR 612
+R
Sbjct: 407 EERR 410
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Frame = +1
Query: 94 LLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RN 252
++ +S+ S +G +F+ NL L F GT+V C + R
Sbjct: 116 MIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Query: 253 YGFVHMENEQVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDK 417
YGFV + E + AI+ LNG++++ + I + + + A T ++V NL++
Sbjct: 176 YGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEA 235
Query: 418 TRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 564
T E++ F ++G++ ++R+ +GFV+ + D A++ LNG D
Sbjct: 236 TTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+++G+L T++ L F + VV + R+ YG+V+ N +A+Q L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 310 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 483
N ++G+ I+I +++ A + +FV NL + E F GT+V C +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 484 ------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
R YGFV D +AI++LNG +++ + + V
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 73.3 bits (172), Expect = 1e-13
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 300
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 301 QNLNGELVHGQAI---KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV- 468
Q LN +V + I K R P T +++ NL +RE F +FG +V
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 469 ------ECDIVRNYGFVHLDATGDVNDAIKELNG 552
E + R Y FV+ D D A + +NG
Sbjct: 230 LAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Score = 58.0 bits (134), Expect = 5e-09
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 19/173 (10%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 300
T +++G+L TE L F ++ ++ + ++ YG+ + + Q AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 301 QNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 477
+ N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V C
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 478 IV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPM---KVQLSTSRVR 606
+ R YGFV + + AI+ LN +V + + K T RV+
Sbjct: 143 VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVK 195
Score = 44.4 bits (100), Expect = 7e-05
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 31/180 (17%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
+++ NL +E LR F ++G +V I R Y FV+ +N + R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 313 GELVHGQAIKIEAAKSRKAPS-----------------TPTTKIFVGNLTDKTRAPEVRE 441
G + + + A+ + + I+V N+ E+R+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 442 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
F + GT+ ++ + +GFV + DA+K +G M G+P+ V ++ +
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
I++ N++ TE +LR F + GT+ ++ + +GFV + +A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 313 GELVHGQAIKIEAAKSRK 366
G++ HG+ + + A+ ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Frame = +1
Query: 322 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---- 489
VH A+ A S + S T ++VG+L + + F +F ++ + ++
Sbjct: 4 VHA-ALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSG 62
Query: 490 ----YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST-SRVRQRPGMGD 627
YG+ + + D N AI++ N +++G+ ++V S + +R G+G+
Sbjct: 63 RSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN 113
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 71.7 bits (168), Expect = 4e-13
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Frame = +1
Query: 91 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------R 249
I + + +P +++ G G IFI NL L F +GT++ C + +
Sbjct: 119 IRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Query: 250 NYGFVHMENEQVGREAIQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNL 408
YGFV E E+ + AI LNG L++ + + + E A+ P+ T ++V NL
Sbjct: 177 GYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNL 236
Query: 409 TDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGM 555
+ E+R+ F KFG + ++R+ +GFV+ + T A++++NG+
Sbjct: 237 PKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGI 292
Score = 57.2 bits (132), Expect = 9e-09
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
++ G+L K TEA L LF+ VV + R+ Y +++ N A++ LN
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
+ + I+I S + PST + IF+ NL + E F FGT++ C +
Sbjct: 111 YTPLFDRPIRIML--SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 484 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
+ YGFV + AI +LNGM+++ + + V
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 31/184 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++ NL + E +LR F K+G + ++R+ +GFV+ E + A++ +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 313 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 441
G L G+A K E + + + +++ NL D +++E
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 442 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+F ++G V ++ R +GFV + A+ E+NG M+ +P+ + L+ +
Sbjct: 351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Query: 601 VRQR 612
+R
Sbjct: 411 EDRR 414
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 70.9 bits (166), Expect = 7e-13
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+GNL+ L LFE+ GTV +++ R +GFV M + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 307 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 465
N ++G+ + + A R +AP P +++VGNL + +LF + G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 466 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
VE +V R +GFV + ++N+AI L+G ++G+ ++V ++ R +R
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
F++++GNL L LF ++G VVE +V R +GFV M + EAI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 304 NLNGELVHGQAIKIEAAKSR 363
L+G+ + G+AI++ A+ R
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 69.3 bits (162), Expect = 2e-12
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 23/176 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+GNL L LFE+ GTV +++ R +GFV M + +A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 307 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 465
N V+G+ + + A R + P +I+VGNL + + LF + G V
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 466 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 609
V+ +V R +GFV + +VN AI L+G ++G+ +KV ++ R R+
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
F+I++GNL L LF ++G VV+ +V R +GFV M NE AI
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 304 NLNGELVHGQAIKIEAAKSR 363
L+G+ + G+AIK+ A+ R
Sbjct: 267 ALDGQNLEGRAIKVNVAEER 286
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 69.3 bits (162), Expect = 2e-12
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL--VH 327
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ +AI+ L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 328 GQAIKIEAAKSR--------KAPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVEC 474
+ + +E AK KAPS PT +FV N +T+ ++ + F+ +G V
Sbjct: 64 KRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV 123
Query: 475 DIVRNYGFVHLDATGDVNDAIK 540
I RN+ FV + D A++
Sbjct: 124 RIRRNFSFVQFETQEDATKALE 145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQ 570
+FVGN +TR ++ LF K+G V D+ Y FV+ + D DAI++L+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 571 PMKVQLSTSRVRQRPGMGD 627
++ + ++ + GD
Sbjct: 64 KRRLSVEWAKGERGRPRGD 82
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 145 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 321
T +F+ N +T E D+ FE YG V I RN+ FV E ++ +A++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSK 151
Query: 322 VHGQAIKIEAA 354
+ + + +E A
Sbjct: 152 ILDRVVSVEYA 162
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 66.9 bits (156), Expect = 1e-11
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 327
+F GN E DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 328 GQAIKIEAAK------------SRKAPST--PTTKIFVGNL-TDKTRAPEVRELFQKFGT 462
G+ +++E K SR++ S+ P+ +FV N D TR ++ + F+ +G
Sbjct: 64 GRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGK 123
Query: 463 VVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ 636
+V I RN+ F+ +A D A+ N + + + V+ + R PE+
Sbjct: 124 IVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPER 181
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 66.9 bits (156), Expect = 1e-11
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 321
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 322 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 483
+ GQ +K+ A ++ ++ IFVG+L+ + + + F F + + ++
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQK 184
Query: 484 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 594
R +GFV D AI E+NG V + ++ +T
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +1
Query: 379 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 540
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 541 ELNGMMVDGQPMKV 582
LNG + GQPMKV
Sbjct: 119 TLNGRHIFGQPMKV 132
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 318
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 329
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 65.7 bits (153), Expect = 3e-11
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 297
+G IFI NL L F +G ++ C + + YGFV + ++ + A
Sbjct: 130 SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 298 IQNLNGELVHGQAIKIE--AAKSRKAPS---TPTTKIFVGNLTDKTRAPEVRELFQKFGT 462
I LNG L++ + + + K ++ PS T ++V NL++ E+ ++F +FG
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV 249
Query: 463 VVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 564
C I+R+ +GFV+ + + D A+ LNG D
Sbjct: 250 TTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFD 290
Score = 63.7 bits (148), Expect = 1e-10
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 16/174 (9%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 297
GT +++G+L T++ L F + G VV + R+ YG+V+ Q A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 298 IQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 474
+ LN ++G+AI++ + + + IF+ NL + E F FG ++ C
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 475 DIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRP 615
+ + YGFV D AI +LNGM+++ + + V ++++ P
Sbjct: 163 KVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP 216
Score = 62.5 bits (145), Expect = 2e-10
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++ NLS+ ++ +L +F ++G C I+R+ +GFV+ EN A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 313 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 441
G E G+A K E + A + + ++V NL + ++RE
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 442 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
F FGT+ C ++R+ GFV + AI E+NG M+ +P+ V L+
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++ NL + T+ LR F +GT+ C ++R+ GFV + AI +N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 313 GELVHGQAIKIEAAKSRK 366
G+++ + + + A+ ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 65.3 bits (152), Expect = 3e-11
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
+++ NL + T+ADL+ LF ++G + ++ R +GFV+ E + AI+ +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTTK-------------------IFVGNLTDKTRAPEV 435
G +V + + + A+ RK T K ++V NL D ++
Sbjct: 181 GVVVDEKELHVGRAQ-RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 436 RELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 594
ELF +FGT+ C ++ + GFV + + + A+ ++NG MV +P+ V L+
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
Query: 595 SRVRQR 612
+ + +
Sbjct: 300 CKEQHK 305
Score = 64.5 bits (150), Expect = 6e-11
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Frame = +1
Query: 97 LFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------Y 255
+ F +P ++M G G +F+ NL + L +F +G V+ C + R+ Y
Sbjct: 16 IMFSERDPSNRMSGRGN--VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGY 73
Query: 256 GFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKA--PSTPTTKIFVGNLTDKTRAP 429
GFV ++ A NG L+ Q I + SR S T ++V NL +
Sbjct: 74 GFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDA 133
Query: 430 EVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
+++ LF +FG + ++ R +GFV+ + AI+++NG++VD + + V
Sbjct: 134 DLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 64.5 bits (150), Expect = 6e-11
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 327
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 328 GQAIKIEAAK-----------SRKAPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 465
G+ +++E K SR++ S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 466 VECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ 636
V I RN+ F+ +A D A+ N + + + V+ + R PE+
Sbjct: 124 VNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 64.5 bits (150), Expect = 6e-11
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 327
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 328 GQAIKIEAAK-----------SRKAPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 465
G+ +++E K SR++ S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 466 VECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ 636
V I RN+ F+ +A D A+ N + + + V+ + R PE+
Sbjct: 124 VNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 64.1 bits (149), Expect = 8e-11
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYG--FVHMENEQVGREAIQNL 309
++ N+ +T D+R LFEKYG+V++ ++ RN G F+ M + + A+++L
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 310 NGELVHGQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFG 459
G+ +K++ AK++K PS PT +FV NL + RA ++E F G
Sbjct: 155 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTG 214
Query: 460 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTS--RVRQ 609
VV +++ YGFV A+ E G G+P+++ S +++
Sbjct: 215 NVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQA 274
Query: 610 RPGMGDPEQ 636
+ G+ PE+
Sbjct: 275 KEGLQPPEE 283
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYG--FVHLDATGDVNDAIKE 543
T++ N+ + ++R LF+K+G+V++ ++ RN G F+ + + + A+K
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153
Query: 544 LNGMMVDGQPMKVQLSTSRVRQ 609
L +G+ +KV + ++ ++
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKK 175
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 64.1 bits (149), Expect = 8e-11
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 564
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 565 GQPMKVQLSTSR---VRQRPGMGDPE---QCYRCGRGGHWS 669
G + V+ S R G P +C+ CG GHW+
Sbjct: 71 GSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWA 111
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 321
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 322 VHGQAIKIEAAKSRKAP 372
G I +EA SR AP
Sbjct: 69 FDGSRITVEA--SRGAP 83
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 564
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 565 GQPMKVQLSTSR---VRQRPGMGDPE---QCYRCGRGGHWS 669
G + V+ S R G P +C+ CG GHW+
Sbjct: 71 GSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWA 111
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 321
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 322 VHGQAIKIEAAKSRKAP 372
G I +E SR AP
Sbjct: 69 FDGSRITVEF--SRGAP 83
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 321
+++GN+ + TE L+ +F G V ++R +YGFVH + + AI +LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 322 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 483
+ GQ IK+ A ++ ++ IFVG+L+ + + + F F + + ++
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQK 180
Query: 484 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 594
R +GFV D AI E+NG + + ++ +T
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT 221
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 61.7 bits (143), Expect = 4e-10
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Frame = +1
Query: 91 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---R 249
I + + +P +++ G G +FI NL L F +GT++ C D+V +
Sbjct: 115 IRIMLSNRDPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK 172
Query: 250 NYGFVHMENEQVGREAIQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNL 408
YGFV E E+ + AI LNG L++ + + + + A+S T ++V NL
Sbjct: 173 GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNL 232
Query: 409 TDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGM 555
+ E+++ F K+G + ++ R++GFV+ + A++++NG+
Sbjct: 233 PKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 288
Score = 55.2 bits (127), Expect = 4e-08
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++G+L E+ L LF + V + R+ Y +V+ N + A+++LN
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVEC--- 474
+ + I+I S + PST + +F+ NL + E F FGT++ C
Sbjct: 107 YAPIRDRPIRIML--SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 164
Query: 475 -DIV---RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
D+V + YGFV + AI +LNGM+++ + + V
Sbjct: 165 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 54.4 bits (125), Expect = 7e-08
Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 31/177 (17%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
+++ NL + T+ +L+ F KYG + ++ R++GFV+ + + A++ +N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 313 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 441
G L G+A K E + + + +++ NL D +++E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 442 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
+F ++G V C ++ N +GFV + A+KE+NG M+ +P+ V L+
Sbjct: 347 MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++ NL D + L+ +F +YG V C ++ N +GFV N + A++ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 429
G+++ + + + A+ ++ +F + T +P
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP 428
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +1
Query: 334 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------Y 492
A+ AA + + P + ++VG+L + +LF + V + R+ Y
Sbjct: 28 AVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGY 87
Query: 493 GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
+V+ D + A++ LN + +P+++ LS
Sbjct: 88 AYVNFANPEDASRAMESLNYAPIRDRPIRIMLS 120
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 61.3 bits (142), Expect = 6e-10
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 291
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 292 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 462
+ I++ +NG+ V + + A ++ T KIFVG + E+++ F K+G
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 463 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPG 618
VVE ++R+ +GFV D+ V++ + + G M+D +V++ + ++
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVEIKKAEPKKSLN 192
Query: 619 MGDP 630
P
Sbjct: 193 RSPP 196
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 60.9 bits (141), Expect = 7e-10
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 31/184 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN A+++LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 313 G------ELVHGQA-----------IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 441
G E G+A ++ E A ++ ++V NL +++E
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 150
Query: 442 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+F FGTV ++R+ GFV + +A+ +L+G M++ +P+ V ++ +
Sbjct: 151 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 210
Query: 601 VRQR 612
+R
Sbjct: 211 EDRR 214
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +1
Query: 307 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 486
LN + V+ + A T T ++V NL + T +++ F ++G + +++
Sbjct: 3 LNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 62
Query: 487 N-------YGFVHLDATGDVNDAIKELNGMMVD 564
+ +GFV+ + D A++ LNG D
Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFD 95
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 291
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 292 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 462
+ I++ +NG+ V + + A ++ T KIFVG + E+++ F K+G
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 463 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 588
VVE ++R+ +GFV D+ V++ + + G M+D +V L
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVSL 182
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 288
P K++ GNL A L + + + +++ R + FV M N +
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139
Query: 289 REAIQNLNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQK 453
I NL+G G+A+K+ A K K P P T K+FVGNL+ + + F++
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 199
Query: 454 FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
G VV +V R YGFV + ++ A++ L+G ++G+ ++V L+ +
Sbjct: 200 CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+GNLS T L F + G VV +V R YGFV ++ A+++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 307 LNGELVHGQAIKIEAAKSRK 366
L+G + G+AI++ A+ +K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 60.1 bits (139), Expect = 1e-09
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 321
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 322 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE--LFQKFGTVVECDIV-- 483
+ GQ +K+ A ++ ++ IFVG+L +PEV + LF F C
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDL-----SPEVTDAALFDSFSAFNSCSSYYR 179
Query: 484 -------------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 594
R +GFV D AI E+NG V + ++ +T
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +1
Query: 379 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 540
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 541 ELNGMMVDGQPMKV 582
LNG + GQPMKV
Sbjct: 119 TLNGRHIFGQPMKV 132
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 318
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 59.7 bits (138), Expect = 2e-09
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 321
+++GN+ + TE L+ +F G V C ++R +YGFVH + + AI +LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 322 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 483
+ GQ IK+ A ++ ++ IFVG+L+ + + F + T + ++
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQK 175
Query: 484 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 594
R +GFV D AI E+ G + + ++ +T
Sbjct: 176 TGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 59.3 bits (137), Expect = 2e-09
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
+++IGN+ T L L E++G V + ++ R +GF M++ + ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 307 LNGELVHGQAIKIEAAKSRKAPSTPTT--------------KIFVGNLTDKTRAPEVREL 444
LNG V G+ IK+ + A S + K++VGNL + L
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 445 FQKFGTVVECDIVR--------NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
F + G VV + R +GFV + DV AI LN +++GQ ++V
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 528
S ++++GN+ ++ +L ++ G V + ++ R +GF + + D N
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 529 DAIKELNGMMVDGQPMKVQLSTSRVRQRPGM 621
+++LNG V+G+ +KV ++ + P +
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEKPIASSPDL 162
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 58.8 bits (136), Expect = 3e-09
Identities = 48/210 (22%), Positives = 101/210 (48%), Gaps = 31/210 (14%)
Frame = +1
Query: 55 SLFGVHIFNLCYILLFFVHSNP*SKMPGT-GTFKIFIGNLSDKTTEADLRPLFEKYGTVV 231
+L G ++ + F++ + + M G + +++ NL + T+ L LF +YGTV
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVS 229
Query: 232 ECDIVRN-------YGFVHMENEQVGREAIQNLNG------ELVHGQAIKIEAAKSR--- 363
++R+ +GFV+ N + ++A+++L G +L G+A+K + +
Sbjct: 230 SVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQ 289
Query: 364 -------KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFV 501
P+ + ++V NL++ +RE+F +G +V ++ + +GFV
Sbjct: 290 KFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFV 349
Query: 502 HLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
+ A + LNG +VDG+P+ V+++
Sbjct: 350 CFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/176 (22%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAI 300
TG +++ NL T + L +F +G+++ C +V + +GFV + EQ A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 301 QNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 465
L+G +V+G+ + + + ++ A + +T ++V NL + + LF ++GTV
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 466 VECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
++R+ +GFV+ + A++ L G+ + + + V + + +R
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 312
+++ NLS+ E LR +F YG +V ++ + +GFV N + ++A + LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 429
G LV G+ I + A+ ++ + F T+AP
Sbjct: 366 GFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAP 404
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 57.2 bits (132), Expect = 9e-09
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL-NGELVHG 330
+++GN T +DL LF K+G V D+ Y FV+ E+E+ +AI+ N +G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 331 -QAIKIEAAK----------SRKAPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVV 468
+ + +E AK KA S PT +FV N +TR ++ F+ +G V+
Sbjct: 64 RRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVL 123
Query: 469 ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
+ RN+ FV D A+ + + + + V+ + +R
Sbjct: 124 NVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGER 171
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
KIF+G L+ +TT A+ F KYG + + I+ R +GFV + V + IQ
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 307 LNGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 477
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E
Sbjct: 102 -DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQ 160
Query: 478 IVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 585
I+R+ +GFV ++ V+ + + N + + G ++++
Sbjct: 161 IMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIK 204
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 55.6 bits (128), Expect = 3e-08
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 294
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 295 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 462
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+F +FG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236
Query: 463 VVECDIVRN-------YGFVHLDATGDVNDAIKELNG---MMVDGQPMKVQLSTSRVRQR 612
V + ++R+ GFV + AI LNG M QP+ V+ + + R +
Sbjct: 237 VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK-RPK 295
Query: 613 PG 618
PG
Sbjct: 296 PG 297
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 294
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV +++
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 295 AIQNLNG 315
AI LNG
Sbjct: 267 AIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 55.6 bits (128), Expect = 3e-08
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 294
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 295 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 462
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+F +FG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236
Query: 463 VVECDIVRN-------YGFVHLDATGDVNDAIKELNG---MMVDGQPMKVQLSTSRVRQR 612
V + ++R+ GFV + AI LNG M QP+ V+ + + R +
Sbjct: 237 VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK-RPK 295
Query: 613 PG 618
PG
Sbjct: 296 PG 297
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 294
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV +++
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 295 AIQNLNG 315
AI LNG
Sbjct: 267 AIDGLNG 273
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/192 (22%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
++++GNL T ++L +F + GTVV+ IV R +GFV M + + +EA+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 307 LNGELVHGQAIKI-----------EAAKSR-----KAPSTPTTKIFVGNLTDKTRAPEVR 438
N + G+ +K+ E +++ ++ K++ GNL + ++
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 439 ELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 594
+ F V+ ++ R +GF+ ++ +V A+ +NG+ V+G+ +++ L++
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 296
Query: 595 SRVRQRPGMGDP 630
R++P + P
Sbjct: 297 E--REKPTVSPP 306
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +1
Query: 340 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 495
++E K S +++VGNL + E+ ++F + GTVV+ IV R +G
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 496 FVHLDATGDVNDAIKELNGMMVDGQPMKV 582
FV + + + +A++ N + G+ +KV
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K++ GNL T L+ F V+ ++ R +GF+ E+ + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 307 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 402
+NG V G+A+++ A R+ P+ + G
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSVEEG 311
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Frame = +1
Query: 112 SNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVH 267
S+P S G T K+++ LS +TTE LR FE++G ++ ++V + + F+
Sbjct: 66 SSPPSSSSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 268 MENEQVGREAIQNLNGELVHGQAIKIEAAKSR 363
E E+ +AIQ ++G+ + G+ I +E AK+R
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Frame = +1
Query: 301 QNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 480
+++ G L+ ++ + S P TK++V L+ +T +R+ F++FG ++ ++
Sbjct: 49 RDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNM 108
Query: 481 V--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
V + + F+ + + AI+ ++G +DG+ + V+ + +R
Sbjct: 109 VMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 53.6 bits (123), Expect = 1e-07
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 30/184 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
IF+G+L+ ++A L F EKY +V +V + YGFV +E +A+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 307 LNGELVHGQAIKIEAAKSRKA----------PS---------TPTTKIFVGNLTDKTRAP 429
+NG +A++I A RK PS T T IFVG L
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 430 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 603
++++ F +FG +V I + GFV + +A+++LNG ++ Q +++ +
Sbjct: 321 DLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 380
Query: 604 RQRP 615
++P
Sbjct: 381 NKQP 384
Score = 44.0 bits (99), Expect = 9e-05
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFE--KYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 303
I++G+L + EA L F + +V ++RN YGFV E+ V + +Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 304 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 459
NG + Q ++ A + R + P IFVG+L + E F +K+
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 460 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+V +V + YGFV + A+ E+NG+ + M++ +T R
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 52.4 bits (120), Expect = 3e-07
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 30/194 (15%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K+++ +S TE D+R +FEKYG V E + ++ Y F+ + + G AI
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 307 LN------GELVHGQAIKIEAAKSR------KAPSTPTTKIFVGNLTDKTRAPEVRELFQ 450
L GE++ + EA + R + P P K++V L +T EV E+F
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNP--KLYVRCLNKQTTKMEVNEVFS 228
Query: 451 KFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKELNGMMV---DGQPMKVQLSTSR 600
++G + + I R Y FV AIK LNG+ QP+ V+ + +
Sbjct: 229 RYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPK 288
Query: 601 VRQRPGMGDPEQCY 642
+P +G+ +
Sbjct: 289 ---KPRLGEQRSTF 299
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 304 NLNGELVHGQAIKIEAAKSR 363
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 544 LNGMMVDGQPMKVQLSTSR 600
+NG +DG+ + V + SR
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 304 NLNGELVHGQAIKIEAAKSR 363
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 544 LNGMMVDGQPMKVQLSTSRVR--QRPGMGDPEQCYRCGRGGHWS 669
+NG +DG+ + V + SR G G YR G GG +S
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYS 110
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 304 NLNGELVHGQAIKIEAAKSR 363
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 544 LNGMMVDGQPMKVQLSTSRVR--QRPGMGDPEQCYRCGRGGHWS 669
+NG +DG+ + V + SR G G YR G GG +S
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYS 110
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 52.0 bits (119), Expect = 3e-07
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNL 309
+++G L + +E L LF + G VV ++ +NYGF+ +E+ AI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-- 483
N +HG+ I++ A K +F+GNL + + F FG + +
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMR 146
Query: 484 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ 636
R +GF+ D+ + AI+ + G + + + V + + + G P +
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAE 204
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +1
Query: 124 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 279
S+ P T K+FI LS T+E LR FE +G +VE I+ + Y F+ E
Sbjct: 274 SESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 333
Query: 280 QVGREAIQNLNGELVHGQAIKIEAAKSR 363
+ A++ +NG++++G I ++ AK++
Sbjct: 334 EAAGTALKEMNGKIINGWMIVVDVAKTK 361
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +1
Query: 364 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGD- 522
++P T K+F+ L+ T +R F+ FG +VE I+ R+ G+ L+ T +
Sbjct: 275 ESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEE 334
Query: 523 -VNDAIKELNGMMVDGQPMKVQLSTSR 600
A+KE+NG +++G + V ++ ++
Sbjct: 335 AAGTALKEMNGKIINGWMIVVDVAKTK 361
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 51.2 bits (117), Expect = 6e-07
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 537
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 538 KELNGMMVDGQPMKVQLS-TSRVRQRPGMGDPEQCYRCGRGG 660
+G DG ++V+L+ R G R GRGG
Sbjct: 63 YGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGG 104
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 318
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 319 LVHGQAIKIEAAKSRKAPS 375
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 51.2 bits (117), Expect = 6e-07
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 537
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 538 KELNGMMVDGQPMKVQLS-TSRVRQRPGMGDPEQCYRCGRGG 660
+G DG ++V+L+ R G R GRGG
Sbjct: 63 YGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGG 104
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 318
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 319 LVHGQAIKIEAAKSRKAPS 375
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+FIG ++ E LR F KYG VV+ ++ R +GFV + + AIQ
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 307 LNGELVHGQAIKIEAAKSR 363
L+G +HG+ +K+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
++K+F+G + +RE F K+G VV+ ++ R +GFV ++ + AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 538 KELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
+ L+G + G+ +KV + R G G Y G GG+
Sbjct: 99 QALDGRDLHGRVVKVNYANDRT---SGGGFGGGGYGGGGGGY 137
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 50.8 bits (116), Expect = 8e-07
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVE--------CDIVRNYGF---VHMENE--QVGR 291
++FIGN+ TE + R + E G VE + RN GF ++ N R
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 292 EAIQNLNGELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEVRELFQKF 456
+ + + N +L G A + A + +P + ++V N+ + T +++ELFQ+
Sbjct: 257 QKMIDSNFKL-EGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 457 GTVVECDIV------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
G V + R++GFVH A+K+ V+GQP++V L+ + ++
Sbjct: 316 GEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Frame = +1
Query: 130 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 285
+P G+ ++FIG L E DLR L E+ G + E ++++ Y FV + + V
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 286 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 465
++AI+ L+ + G+ I+ ++++ ++F+GN+ E R++ + G
Sbjct: 170 AQKAIEELHSKEFKGKTIRCSLSETK-------NRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 466 VE 471
VE
Sbjct: 223 VE 224
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +1
Query: 397 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 552
V NL++ TR P++ ELF+ FG V C + R +GFV + D AI +LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 553 MMVDGQPMKVQLSTSRVRQRP 615
D ++V+ ST + + P
Sbjct: 238 YGYDNLILRVEWSTPKTQLDP 258
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 160 IGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNG 315
+ NLS+ T DL LF +G V C + R +GFV + + + AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 316 ELVHGQAIKIE 348
+++E
Sbjct: 238 YGYDNLILRVE 248
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 538 KELNGMMVDGQPMKVQLSTSR 600
KE++G ++G+ ++V L+T R
Sbjct: 94 KEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 538 KELNGMMVDGQPMKVQLSTSR 600
KE++G ++G+ ++V L+T R
Sbjct: 94 KEMDGKELNGRQIRVNLATER 114
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +1
Query: 169 LSDKTTEADLRPLFEKYGTVV---ECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAI 339
LS TT+ LR LF + ++ + + +GF+ E+E ++A++ LNG++V+G+ I
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 340 KIEAAKSRKAPST 378
+E AK +AP+T
Sbjct: 138 FVETAKEVEAPTT 150
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 406 LTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPM 576
L+ T +R+LF F ++ + + +GF+ ++ D A+K LNG +V+G+ +
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 577 KVQ 585
V+
Sbjct: 138 FVE 140
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.0 bits (114), Expect = 1e-06
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 42/212 (19%)
Frame = +1
Query: 103 FVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYG 258
F P + + K+F+GNL A L LFE G V +++ R +G
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 259 FVHMENEQVGREAIQNLNGELVHGQAI---------KIEAAKSRKAPST----------- 378
FV M + A Q NG + G+ + K E SR S+
Sbjct: 136 FVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 379 ------PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDAT 516
+++VGNL+ + LF + G VVE ++ + +GFV D++
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSS 255
Query: 517 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
+V +AIK L+G +DG+ ++V + +R +R
Sbjct: 256 QEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Frame = +1
Query: 346 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 501
+ A ++ + K+FVGNL + ++ +LF+ G V +++ R +GFV
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 502 HLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPG 618
+ + +V A ++ NG +DG+P++V ++ G
Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDG 176
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.0 bits (114), Expect = 1e-06
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 309
K+F+ NL + D+ LF + GTV +I+R + FV M + + + AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 310 NGELVHGQAIKIEAAKSRK-------------APSTPTTKIFVGNLTDKTRAPEVRELFQ 450
+ V G+ I + A+ K AP K++V NL K R+ +RELF
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 451 KFG-TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
V +V YGFV + +AI +LNG + G+P+ ++ S
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +1
Query: 124 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYG-TVVECDIV--------RNYGFVHMEN 276
S PG K+++ NL+ K LR LF V +V YGFV
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 277 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD 414
+ AI LNG+ + G+ I ++ + + S + N ++
Sbjct: 246 REEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASE 291
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 50.0 bits (114), Expect = 1e-06
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 30/184 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
IF+G+LS ++ L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 307 LNGELVHGQAIKIEAAKSRKA----------PSTPTTK---------IFVGNLTDKTRAP 429
+NG +A++I A RK P+ T+ IFVG L
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 430 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 603
++++ F +FG +V I + GFV + +A+++LNG ++ Q +++ +
Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 378
Query: 604 RQRP 615
++P
Sbjct: 379 NKQP 382
Score = 41.1 bits (92), Expect = 6e-04
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRN--------YGFVHMENEQVGREAIQ 303
I++G+L EA L F +V ++RN YGFV E+ V + ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 304 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 459
NG + Q ++ A + R + P IFVG+L+ + E F +K+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 460 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+V +V + YGFV + A+ E+NG+ + M++ +T R
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 50.0 bits (114), Expect = 1e-06
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 29/199 (14%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 300
+ IF+G+L+ T+ L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 301 QNLNGELVHGQAIKIEAAKSRK------------APSTPT------TKIFVGNLTDKTRA 426
+NG + ++I A S+K A T T +FVG L
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 427 PEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
++ +F ++G +V I + GFV +A++ LNG+ + G V+LS R
Sbjct: 275 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGG--TTVRLSWGR 332
Query: 601 VRQRPGMGDPEQCYRCGRG 657
GDP Q Y G G
Sbjct: 333 SPSNKQSGDPSQFYYGGYG 351
Score = 36.3 bits (80), Expect = 0.018
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
++IG+L E L F G +V ++RN YGF+ + +Q
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 310 NGELVHG---QAIKIEAAK---SRKAPSTPTTKIFVGNL----TDKTRAPEVRELFQKF- 456
N + Q ++ A K +P IFVG+L TD R +
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 457 GTVVECDIV----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
G V D V + YGFV + A+ E+NG+ +PM++ + S+
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 537
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 538 KELNGMMVDGQPMKVQLS 591
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 318
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 319 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 402
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 537
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 538 KELNGMMVDGQPMKVQLS 591
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 318
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 319 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 402
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 537
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 538 KELNGMMVDGQPMKVQLS 591
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 318
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 319 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 402
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 49.6 bits (113), Expect = 2e-06
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 300
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 301 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNLTDKTRAPEVRE 441
N++G LV + + ++ + +P P T KIFVG L + +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 442 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD-GQPMKV 582
F++FGT + ++ R +GF+ D+ V + ELNG MV+ + +
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Query: 583 QLSTSRVRQRPGMG 624
+LS R G G
Sbjct: 187 ELSPGPSRSPLGAG 200
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 288
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 289 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 384
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 49.6 bits (113), Expect = 2e-06
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 300
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 301 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNLTDKTRAPEVRE 441
N++G LV + + ++ + +P P T KIFVG L + +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 442 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD-GQPMKV 582
F++FGT + ++ R +GF+ D+ V + ELNG MV+ + +
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Query: 583 QLSTSRVRQRPGMG 624
+LS R G G
Sbjct: 187 ELSPGPSRSPLGAG 200
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 133 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 288
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 289 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 384
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 49.2 bits (112), Expect = 2e-06
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
IF+G+L+ + T+ L F+ YG+V +V + YGFV +E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 307 LNGELVHGQAIKIEAAKSRKA-PSTPT-----------------TKIFVGNLTDKTRAPE 432
+NG+ + ++I A ++ A P P T IFVG L E
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 433 VRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 606
++ +F +FG ++ I + GFV A+ LNG + GQ +++ S +
Sbjct: 276 LKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNK 335
Query: 607 Q 609
Q
Sbjct: 336 Q 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Frame = +1
Query: 124 SKMPGTGTF--KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 273
S+ PG+ + ++IG+L E + +F + G ++RN YGF+
Sbjct: 50 SQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFV 109
Query: 274 NEQVGREAIQNLNGELVHG--QAIKIE-----AAKSRKAPSTPTTKIFVGNLTDKTRAPE 432
+ V +Q NG + Q ++ A + R P IFVG+L +
Sbjct: 110 SHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYM 169
Query: 433 VRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
+ + F+ +G+V +V + YGFV + A+ E+NG +PM++
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+FIG LS TTE L F K G VVE IV + +GFV + ++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 307 LNGELVHGQAIKIEAAKSRKA 369
NG+ ++G+ I ++ AK++++
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
Score = 41.1 bits (92), Expect = 6e-04
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 540
+K+F+G L+ T + E F K G VVE IV + +GFV + + A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 541 ELNGMMVDGQPMKVQLSTSRVRQRPGMGDP 630
E NG ++G+ + V + ++ G G P
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQSLGGGGGYP 123
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 292 EAIQNLNGELVHGQAIKIEAAKSR 363
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 544 LNGMMVDGQPMKVQLSTSR 600
+NG +DG+ + V + SR
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 292 EAIQNLNGELVHGQAIKIEAAKSR 363
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 544 LNGMMVDGQPMKVQLSTSRVRQRPG--MGDPEQCYRCGRGGHWS 669
+NG +DG+ + V + SR G G YR G GG +S
Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYS 112
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAI 300
G ++++GNL +E DLR +FE +G+V E + + +GFV + R A+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 301 QNLNGEL-VHGQAIKIEAAKSR-KAPSTPTTKIFVGNLTD 414
NLNG+L + G+AIK+ A + + P T+ G+L D
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT-TGDLDD 380
Score = 35.9 bits (79), Expect = 0.024
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 309
+F ++ + TE D+ F + G V + I+ R G+V + AI L
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 242
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTT-----------------KIFVGNLTDKTRAPEVR 438
+G+ + GQ + ++ +++ K TT +++VGNL ++R
Sbjct: 243 SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLR 302
Query: 439 ELFQKFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKELNGMM-VDGQPMKVQLST 594
++F+ FG+V E + + +GFV D +A+ LNG + + G+ +KV T
Sbjct: 303 KVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKVSAVT 361
Query: 595 SR 600
+
Sbjct: 362 DQ 363
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 300
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 301 QNLNGELVHGQAIKIEAAK 357
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 537
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 538 KELNGMMVDGQPMKVQLS 591
+ L+G +VDG+ + VQ +
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 300
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 301 QNLNGELVHGQAIKIEAAK 357
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 537
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 538 KELNGMMVDGQPMKVQLS 591
+ L+G +VDG+ + VQ +
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 4e-06
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
++IG+L E L F + G +V ++RN YGF+ + +Q
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 310 NGELVHGQAIKIEA-----AKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVE 471
NG + G + +K + P IFVG+L ++E F+ + +V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 472 CDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+V + YGFV + N A+ E+NG+ +PM++ +T +
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 327
I + NL TE +L+ F + G V+ I + YG+V + EA+Q + G+++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 328 GQAIKIEAAKS 360
QA++I +K+
Sbjct: 299 QQAVRISWSKN 309
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
IF+G+L+ T+ L+ F Y +V +V + YGFV E A+
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 307 LNGELVHGQAIKIEAAKSRK 366
+NG + ++I AA +K
Sbjct: 178 MNGLYCSTRPMRISAATPKK 197
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 48.4 bits (110), Expect = 4e-06
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
++++ N+ A L +F+ +GTV+ ++ RN G+V M + + AI +
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 307 LNGELVHGQAIKIEAAK-----SRKAP----STPTT--------KIFVGNLTDKTRAPEV 435
L+G V G+ +++ + +R+ P STP K++VGNL T+ +
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 436 RELFQKFGTVVECDIV------RNYGFVHLDAT-GDVNDAIKELNGMMVDGQPMKVQ 585
R F KFGT+V ++ RN F L T G+ DA NG +G+ + V+
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 48.0 bits (109), Expect = 6e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 307 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 435
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 436 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 564
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 279
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 280 QVGREAIQNLNGELV 324
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 48.0 bits (109), Expect = 6e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 307 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 435
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 436 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 564
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 279
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 280 QVGREAIQNLNGELV 324
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 48.0 bits (109), Expect = 6e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 307 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 435
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 436 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 564
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 279
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 280 QVGREAIQNLNGELV 324
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 48.0 bits (109), Expect = 6e-06
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 41/199 (20%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K+FIG +S T E L+ F KYG +VE I+R+ +GF+ + V I +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 307 ---LNGELVHGQ-AIKIEAAKSRKAPSTP----------------TTKIFVGNLTDKTRA 426
++G V + A+ + + K ++P T KIFVG L
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135
Query: 427 PEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV----NDAIKELNGMMVD-G 567
E + F +FGT+ + ++ R +GF+ D+ V + ELNG MV+
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 568 QPMKVQLSTSRVRQRPGMG 624
+ + +LS++ + P +G
Sbjct: 196 RAVPKELSSTTPNRSPLIG 214
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 292 EAIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVG 402
+ EL +G+ ++++ A ++ S TP +G
Sbjct: 178 MVLHKTFHEL-NGKMVEVKRAVPKELSSTTPNRSPLIG 214
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 7e-06
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 38/188 (20%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+FIG +S +T+E LR F +G V+E I+ R +GFV + V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 307 LNGELVHGQAIKIEAAKSR-------KAPST------PTT--KIFVGNLTDKTRAPEVRE 441
L ++ G+ ++ + A R K+ S+ P+ KIFVG L E ++
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 442 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK----ELNGMMVD---GQPM 576
F +FG + + ++ R +GF+ D+ V+ ++ ELNG MV+ P
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Query: 577 KVQLSTSR 600
+ L+T R
Sbjct: 185 DMALNTMR 192
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +1
Query: 133 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 285
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 286 GREAIQNLNGELVHGQAIKIEAA 354
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 7e-06
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 38/188 (20%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+FIG +S +T+E LR F +G V+E I+ R +GFV + V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 307 LNGELVHGQAIKIEAAKSR-------KAPST------PTT--KIFVGNLTDKTRAPEVRE 441
L ++ G+ ++ + A R K+ S+ P+ KIFVG L E ++
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 442 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK----ELNGMMVD---GQPM 576
F +FG + + ++ R +GF+ D+ V+ ++ ELNG MV+ P
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Query: 577 KVQLSTSR 600
+ L+T R
Sbjct: 185 DMALNTMR 192
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +1
Query: 133 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 285
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 286 GREAIQNLNGELVHGQAIKIEAA 354
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 537
+ ++FV L+ T +R+LF FG + E ++R+ +GF+ D+ D A+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 538 KELNGMMVDGQPMKVQLSTSRVRQRPGM 621
K L+G +VDG+ + V+++ + R G+
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNAEEVRAGI 93
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
++ FIG L+ T++ LR FEKYG +VE +V R +GF+ + ++ EAI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 304 NLNGELVHGQAIKIEAAK 357
+NG + G+ I ++ A+
Sbjct: 67 AMNGMDLDGRTITVDKAQ 84
Score = 44.0 bits (99), Expect = 9e-05
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 29/126 (23%)
Frame = +1
Query: 379 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 534
P + F+G L T +R+ F+K+G +VE +V R +GF+ D +++A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 535 IKELNGMMVDGQPMKVQLST--------------------SRVRQRPGMG-DPEQCYRCG 651
I +NGM +DG+ + V + R R RP G C++CG
Sbjct: 65 IAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCG 124
Query: 652 RGGHWS 669
+ GH++
Sbjct: 125 KPGHFA 130
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 47.6 bits (108), Expect = 7e-06
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Frame = +1
Query: 355 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 510
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 511 ATGDVNDAIKELNGMMVDGQPMKV-------------QLSTSRVRQRPGMGDPEQCYRCG 651
+DAIK ++G + + + V QL G G ++C++C
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCR 121
Query: 652 RGGHWS 669
R GHW+
Sbjct: 122 RPGHWA 127
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 307 LNGELVHGQAIKIEAAKSR 363
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 47.6 bits (108), Expect = 7e-06
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Frame = +1
Query: 355 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 510
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 511 ATGDVNDAIKELNGMMVDGQPMKV-------------QLSTSRVRQRPGMGDPEQCYRCG 651
+DAIK ++G + + + V QL G G ++C++C
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCR 121
Query: 652 RGGHWS 669
R GHW+
Sbjct: 122 RPGHWA 127
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 307 LNGELVHGQAIKIEAAKSR 363
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 327
IF+G L TE DL F +G VV I + GFV N Q EAI NLNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 328 GQAIKIEAAKS 360
+++ +S
Sbjct: 389 KNTVRLSWGRS 399
Score = 42.7 bits (96), Expect = 2e-04
Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 24/194 (12%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+++G+L E L F V ++RN YGFV + EA+Q+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 310 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTV 465
+G + Q ++ A + R + + P IFVG+L + E F ++ +V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 466 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGM 621
+V + YGFV + + A+ E+NG + M+V ++T + G
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQ 300
Query: 622 GDPEQCYRCGRGGH 663
+ Q GGH
Sbjct: 301 QNGSQALTLA-GGH 313
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVD 564
IFVG L ++ + F FG VV I + GFV +AI LNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 565 GQPMKVQLSTSRVRQ 609
+++ S +Q
Sbjct: 389 KNTVRLSWGRSPNKQ 403
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 47.2 bits (107), Expect = 1e-05
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Frame = +1
Query: 229 VECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKS--RKAPSTPTTKIFVG 402
V+ D+ +V M+ E +E + + + H A+ +E+ P +FV
Sbjct: 189 VKDDVRLEDDWVPMDEELGAQELEEVIREKAAHSSAVVLESIGDIPEAEVKPPDNVLFVC 248
Query: 403 NLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMM 558
L T ++ +F +FGTVV D++R+ Y F+ + A +++ +
Sbjct: 249 KLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNAL 308
Query: 559 VDGQPMKVQLST------SRVRQRPGM-GDPEQCYRCGRGGH 663
+D + + V S S+ RQ+ G C++CG H
Sbjct: 309 IDDRRIHVDFSQSVSKLWSQFRQKDSQKGKGNGCFKCGSTDH 350
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++ +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 310 NGELVHGQAIKIEAAKS 360
+ L+ + I ++ ++S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGM 555
I+VGNL R EV +LF K+G +V+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 556 MVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGR 654
DG ++V+++ R P + Y R
Sbjct: 69 DFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR 101
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 318
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 319 LVHGQAIKIEAA 354
G +++E A
Sbjct: 69 DFDGCRLRVEIA 80
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+F+ NLS +T +D+ F G VV ++ N YGFV + ++A++N N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 313 GELVHGQAIKIEAAKSRKAPSTP 381
GE +H I I+ AK+ P P
Sbjct: 306 GEYLHDHKIFIDVAKTAPYPPGP 328
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY-------GFVHLDATGDVNDAIKELN 549
+FV NL +T+ P + + F+K G VV ++ N GFV + + +A+++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 550 GMMVDGQPMKVQLSTSRVRQRP 615
G +D + + ++ + P
Sbjct: 189 GECLDNNKIFLDVANKKATYLP 210
Score = 35.5 bits (78), Expect = 0.032
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 312
+F+ NL +T ++ F+K G VV ++ N GFV + EA+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 313 GELVHGQAIKIEAAKSRKAPSTP 381
GE + I ++ A ++KA P
Sbjct: 189 GECLDNNKIFLDVA-NKKATYLP 210
Score = 33.9 bits (74), Expect = 0.098
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 312
+F+ NLS +T + + F+ VV ++ N+ GFV + ++A+Q +N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 313 GELVHGQAIKIEAAKSRKAPSTP 381
GE + + I ++ + P P
Sbjct: 551 GENLRSREIFLDVVELAPYPLRP 573
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGM 555
I+VGNL R E+ ++F K+G +V+ ++ Y FV + + D DAIK +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 556 MVDGQPMKVQLS-----TSRVRQRPGMGDPEQCYRCGRGG 660
+DG ++V+L+ S +R G G Y G GG
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGG 108
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 130 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGRE 294
M G + I++GNL E ++ +F KYG +V+ ++ Y FV E+ + +
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 295 AIQNLNGELVHGQAIKIEAAKSRKAPST 378
AI+ +G + G +++E A + S+
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSS 88
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 307 LNGELVHGQAIKIEAAKSR 363
L+G+ +HG+ I++ A R
Sbjct: 94 LDGQDLHGRRIRVNYATER 112
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
++KIFVG ++ T +RE F K+G VV+ I+ R + FV +T + ++A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 538 KELNGMMVDGQPMKVQLSTSRVR--QRPGMGDPEQCYRCGRGGH 663
+L+G + G+ ++V +T R G G P Y GG+
Sbjct: 93 -QLDGQDLHGRRIRVNYATERGSGFGGRGFGGPGGGYGASDGGY 135
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 46.4 bits (105), Expect = 2e-05
Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
+F+G+L+ T+ L F+ Y +V +V + YGFV +E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 307 LNGELVHGQAIKIEAAKSRK----------------APSTPT-TKIFVGNLTDKTRAPEV 435
+NG+ + ++ A ++K S PT T IFVG + ++
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 436 RELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 609
+ +F +FG +V I + GFV A+ LNG + GQ +++ S +
Sbjct: 295 KSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNK 354
Query: 610 RPGMGDPEQCYRCGRGGHW 666
+ P+Q G GG++
Sbjct: 355 QT---QPDQAQYGGGGGYY 370
Score = 39.5 bits (88), Expect = 0.002
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 25/177 (14%)
Frame = +1
Query: 124 SKMPGT-GTFK-IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 273
S+ PG+ G + ++IG+L E L +F G ++RN YGF+
Sbjct: 70 SQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFV 129
Query: 274 NEQVGREAIQNLNGELVHG--QAIKIEAAK----SRKAPSTPTTKIFVGNLTDKTRAPEV 435
N +Q NG + QA ++ A+ R+ P +FVG+L +
Sbjct: 130 NHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHML 189
Query: 436 RELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 579
E F+ + +V +V + YGFV + A+ E+NG +PM+
Sbjct: 190 TETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 46.4 bits (105), Expect = 2e-05
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Frame = +1
Query: 64 GVHIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 243
GV LCY + S SK G +F+G LS TTE LR + KYG + +
Sbjct: 37 GVRRALLCYNAGLYDPSGD-SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRL 95
Query: 244 VRN--------YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAP 372
VR+ YGFV E E+ A ++ + L+ G+ I ++ + + P
Sbjct: 96 VRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMP 146
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +1
Query: 364 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATG 519
KA P +FVG L+ T +RE+ K+G + +VR+ YGFV +
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
Query: 520 DVNDAIKELNGMMVDGQPMKVQLSTSRV 603
++ A ++ + ++DG+ + V + ++
Sbjct: 117 EMLRAYEDAHHSLIDGREIIVDYNRQQL 144
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +1
Query: 346 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 501
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 502 HLDATGDVNDAIKELNGMMVDGQPMKV 582
+ +V A ++ NG +G+P++V
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 292 EAIQNLNGELVHGQAIKIEAAKSR 363
+AI +LNG + G+ I++ A++R
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR 328
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 544 LNGMMVDGQPMKVQLSTSR 600
LNG +DG+ ++V + +R
Sbjct: 310 LNGADLDGRQIRVSEAEAR 328
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 307 LNGELVHGQAIKIEA 351
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +1
Query: 346 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 501
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 502 HLDATGDVNDAIKELNGMMVDGQPMKV 582
+ +V A ++ NG +G+P++V
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 292 EAIQNLNGELVHGQAIKIEAAKSR 363
+AI +LNG + G+ I++ A++R
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR 336
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 544 LNGMMVDGQPMKVQLSTSR 600
LNG +DG+ ++V + +R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 307 LNGELVHGQAIKIEA 351
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGREAIQNL 309
+++G + TE DL +F +YG +V+ +++R+ G F+ E+++ A+ NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 310 NGELVHGQAIKIE 348
NG LV G+ IK++
Sbjct: 98 NGALVLGRTIKVD 110
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.0 bits (104), Expect = 2e-05
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+++G+L E L F G V ++RN YGFV + E +QN
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 310 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTV 465
+G ++ Q +I A + R + P +FVG+L+ + E F ++ +V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 466 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+V + YGFV + + A+ E+NG + M+V ++T +
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 327
IF+G + + DLR F ++G VV I + GFV + + +AI++LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 328 GQAIKIEAAKS 360
+++ +S
Sbjct: 383 KNTVRLSWGRS 393
Score = 39.9 bits (89), Expect = 0.001
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +1
Query: 325 HGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGF 498
HG + ST T IFVG + ++R+ F +FG VV I + GF
Sbjct: 302 HGSNGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGF 360
Query: 499 VHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRG-GH 663
V DAI+ LNG ++ V+LS R + GD Q + G GH
Sbjct: 361 VQFADRKSAEDAIESLNGTVIGKN--TVRLSWGRSPNKQWRGDSGQQWNGGYSRGH 414
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
+F+G+LS T+ L F ++Y +V +V + YGFV +E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 307 LNGELVHGQAIKIEAAKSRKA 369
+NG + +++ A ++A
Sbjct: 264 MNGAYCSNRQMRVGIATPKRA 284
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 46.0 bits (104), Expect = 2e-05
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+ + NLS T A ++ F VV +V N YGFV + +A++ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 313 GELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 477
GE +H KI K ++P + T +FV NL D + ++ F+ G VV
Sbjct: 220 GEYLHNH--KILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVR 277
Query: 478 IVRN-------YGFVHLDATGDVNDAI 537
++ N +GFV + + A+
Sbjct: 278 LIVNSQGKHAGWGFVEFASANEAEKAL 304
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +1
Query: 373 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 528
++P++K+F+G L+ +++ F FG V E I R +GFV GD
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 529 DAIKELNGMMVDGQPMKVQLSTSRVRQRP 615
A ++G + G+P+++ + RVR P
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALERVRGGP 125
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 538 KELNGMMVDGQPMKVQLSTSR-VRQRPGMGDPEQCYRCGRGGH 663
E++G ++G+ ++V + R R G Y G GG+
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSYGGGGGGY 136
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 44.4 bits (100), Expect = 7e-05
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHME--NEQVGREAIQNLNGELV 324
+ +GN+S + +L+ LFE++G + +N GF+ + + + + A + L +L+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLL 278
Query: 325 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVE 471
G + I + S++ PS T + V NL E+ L + +G V E
Sbjct: 279 RGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKE 330
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 379 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLDATG--DVNDAIKELN 549
P+ + VGN++ E++ LF++FG + +N GF+ + +A + L
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQ 274
Query: 550 GMMVDGQPMKVQLSTSR 600
++ G + ++ S S+
Sbjct: 275 NKLLRGTKLDIRYSISK 291
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 312
+++G L TE +R +F YG+V+ IV + YGFV N + +AI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 313 GELVHGQAIKIEAAKSRKAPSTP 381
G+ + G+A+++ +R P
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNP 91
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 549
++VG L VR +F +G+V+ IV + YGFV +DAI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 550 GMMVDGQPMKVQLSTSR-VRQRPGMG 624
G + G+ ++V T+R R PG G
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNPGPG 94
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 538 KELNGMMVDGQPMKVQLSTSR 600
E++G ++G+ ++V + R
Sbjct: 94 SEMDGKELNGRHIRVNPANDR 114
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +1
Query: 397 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKELNG 552
V NL++ TR P++ ELF FG V + + R +GFV+ + D AI +LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 553 MMVDGQPMKVQLSTSR 600
D ++V+ +T R
Sbjct: 277 YGYDNLILRVEWATPR 292
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +1
Query: 160 IGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQNLNG 315
+ NLS+ T E DL LF +G V + + R +GFV+ + + + AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 316 ELVHGQAIKIEAAKSR 363
+++E A R
Sbjct: 277 YGYDNLILRVEWATPR 292
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 44.4 bits (100), Expect = 7e-05
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 303
F+IF+G+L +E DL+ +F G V E I++N F+ + + A++
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVK 273
Query: 304 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPE-VRELFQKFG------- 459
L +++G+ + A++ +FVGN+ K PE +RE + +G
Sbjct: 274 ELKSPMINGKKCGVTASQDNDT-------LFVGNIC-KIWTPEALREKLKHYGVENMDDI 325
Query: 460 TVVE----CDIVRNYGFVHLDATGDVNDAIKEL 546
T+VE ++ R Y F+ + D DA K L
Sbjct: 326 TLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRL 358
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 160 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQ 333
+ NLS T LR LF GTVV+C I ++ ++ N + A+ LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALA-LNNTEVFGR 413
Query: 334 AIKIEAAKS 360
A+ +E AKS
Sbjct: 414 ALNVEIAKS 422
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 397 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD-ATGDVNDAIKELNGMMVDGQP 573
V NL+ ++R+LF GTVV+C I + +++ + + A LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALALNNTEVFGRA 414
Query: 574 MKVQLSTS 597
+ V+++ S
Sbjct: 415 LNVEIAKS 422
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K++IG LS T E L+ F + V E ++ N YGFV+ +E AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 307 LNGELVHGQAIKIEAAKSRKAPSTP 381
+NG+ ++G I + AK PS P
Sbjct: 92 MNGQELNGFNISVNVAKD--WPSLP 114
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 537
+TK+++G L+ T +++ F F V E ++ N YGFV+ + N AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 538 KELNGMMVDGQPMKVQLS 591
+NG ++G + V ++
Sbjct: 90 SAMNGQELNGFNISVNVA 107
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGRE 294
T KIF+GNL+ +TT DLR FE++G VV+ ++V + YGF+ +
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 295 AIQN 306
A+QN
Sbjct: 69 ALQN 72
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKEL--- 546
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 547 NGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
NG V+ +R G+ D +CY CG GH++
Sbjct: 62 NGWRVELSHKDKGGRGGGGGRRGGIED-SKCYECGELGHFA 101
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKEL--- 546
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 547 NGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
NG V+ +R G+ D +CY CG GH++
Sbjct: 62 NGWRVELSHKDKGGRGGGGGRRGGIED-SKCYECGELGHFA 101
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
+IF+G LS + T+ DL F ++G +++C I+ R +GF+ + + E+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 307 LNGELVHGQAIKIEAAKSR 363
++G + I + A+ +
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 540
++IFVG L+ + ++ F +FG +++C I+ R +GF+ ++++I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 541 ELNG 552
E++G
Sbjct: 67 EMHG 70
Score = 28.7 bits (61), Expect = 3.7
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +1
Query: 631 EQCYRCGRGGHWS 669
++C++CGR GHW+
Sbjct: 126 DECFKCGRVGHWA 138
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 304 NLNG 315
+NG
Sbjct: 66 EMNG 69
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 544 LNG 552
+NG
Sbjct: 67 MNG 69
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
++++GNLS TT+ LR F YG VV+ ++R+ +GFV + A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 307 LNGELVHGQAIKIE 348
++G+ ++G+ + ++
Sbjct: 64 MDGKELNGRRVSVK 77
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 315
+++ ++ + TE L LF +G VV+C I V + F+ +E VG NL+G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDE-VGARTALNLSG 210
Query: 316 ELVHGQAIKIEAAKSRKAPSTPT-------------TKIFVGNLTDKTRAPEVRELFQKF 456
++ +K+ +K+ AP PT I+ N+ K +++ F+
Sbjct: 211 TMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESV 270
Query: 457 -GTVVECDIVRNY------GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
G V ++ +Y GFV + A +G+++ P++V S + VR R
Sbjct: 271 CGEVYRLRLLGDYHHPTRIGFVEF-VMAESAIAALNCSGVLLGSLPIRVSPSKTPVRSR 328
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Frame = +1
Query: 160 IGNLSDKTTEADLRPLFEKY---GTVVECDIVRN----------YGFVHMENEQVGREAI 300
+ NLS KTT+ L+ F K G ++ I+++ YGFV ++ +
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 301 QNLNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQKF 456
++L G ++ G A+ + +++++ P TK+ V N+ + E+R+LF F
Sbjct: 633 RDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPF 692
Query: 457 GTV 465
G +
Sbjct: 693 GQI 695
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 41.5 bits (93), Expect = 5e-04
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 315
+++ ++ TE L LF G VV+C I V + FV ++Q EA+ +L G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEAL-SLGG 201
Query: 316 ELVHGQAIKIEAAKSRKAPSTPT-------------TKIFVGNLTDKTRAPEVRELFQKF 456
++ +++ +K+ P PT I+ N+ K +VR F+
Sbjct: 202 TMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESA 261
Query: 457 -GTVVECDIVRNY------GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
G V ++ + FV A+ +GM+V QP++V S + VR R
Sbjct: 262 CGEVTRLRLLGDQLHSTRIAFVEFALADSALSALN-CSGMVVGSQPIRVSPSKTPVRPR 319
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVGREAIQ--NLN 312
+++G+L+ +TTE+DL LF +YG + + + GF H+E +EA+Q NLN
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 313 G 315
G
Sbjct: 80 G 80
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGM 555
+ ++VG+LT +T ++ ELF ++G + + R + F++ + A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 556 MVDG 567
++G
Sbjct: 77 NLNG 80
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +1
Query: 247 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 420
RN+ V + + R+ + L G L + IKI + P T + G +T
Sbjct: 399 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRT 456
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 309
+F+ +S +TE L F +YG V++ D++ + + +V +++ +A+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTTK 390
N +LV G+ + ++ K+ K + P TK
Sbjct: 83 NAQLVDGRVVILDTTKAAK-HNPPDTK 108
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 537
++ +FV ++ + + + F ++G V++ D++ + + +V + + A+
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 538 KELNGMMVDGQ 570
ELN +VDG+
Sbjct: 80 LELNAQLVDGR 90
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 41.5 bits (93), Expect = 5e-04
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+ N+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 532 AIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 663
A++ + +DG+ + V + S G Y GRGG+
Sbjct: 93 AMQAMQNKELDGRIIGVHPADSGGGGGGGGFARRGGYGGGRGGY 136
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Frame = +1
Query: 355 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 504
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124
Query: 505 LDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
++ D A++ +NG DG+ + V+ + +R
Sbjct: 125 FNSKEDAQSAVEAMNGKFFDGRFILVKFGQPGLSRR 160
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 310 NGELVHGQAIKIE 348
NG+ G+ I ++
Sbjct: 139 NGKFFDGRFILVK 151
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.1 bits (92), Expect = 6e-04
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRN--------YGFVHMENEQVGREAIQ 303
I++G+L EA L F +V ++RN YGFV E+ V + ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 304 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 459
NG + Q ++ A + R + P IFVG+L+ + E F +K+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 460 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
+V +V + YGFV + A+ E+NG+ + M++ +T R
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Score = 34.7 bits (76), Expect = 0.056
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
IF+G+LS ++ L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 307 LNGELVHGQAIKIEAAKSRK 366
+NG +A++I A RK
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 40.7 bits (91), Expect = 9e-04
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 532 AIKELNGMMVDGQPMKVQL-STSRVRQRPGMG 624
A+ + N ++DG+ + S R R P G
Sbjct: 74 AVADPN-PVIDGRKANCNIASFGRPRPSPPRG 104
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 307 LNGELVHGQAIKIEAAK-SRKAPSTP 381
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 40.7 bits (91), Expect = 9e-04
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 532 AIKELNGMMVDGQPMKVQL-STSRVRQRPGMG 624
A+ + N ++DG+ + S R R P G
Sbjct: 74 AVADPN-PVIDGRKANCNIASFGRPRPSPPRG 104
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 307 LNGELVHGQAIKIEAAK-SRKAPSTP 381
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Frame = +1
Query: 109 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 264
H + S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 55 HRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Query: 265 HMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPST------PTTKIFVGNLTDKTRA 426
+ V + ++ ++ + + ++ R T T KIFVG L
Sbjct: 113 TFADSAVAEKVLE--EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEE 170
Query: 427 PEVRELFQKFGTVVECDIVRNY 492
E++ F +G ++E I+ ++
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDH 192
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 279
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 343 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
++ S + S+P K+FVG ++ +T A F KFG VV+ I+
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIM 98
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
KIF+G L+ +T +R FE++G +VE ++ + YGFV + + A QN
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 307 LNGELVHGQAIKIEAAKSRKAPSTPTT 387
+N + +A A + P PT+
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRPPTS 109
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TKIFVG L +T+ +R F++FG +VE ++ + YGFV
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 532 AIKELNGMMVDGQPMKVQLS 591
A + +N ++DG+ L+
Sbjct: 79 ACQNMN-PVIDGRRANCNLA 97
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKEL--- 546
++++VGNL + E+ + F+ FG + + R Y F+ + + D DAI+E+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 547 NGMMVDGQPMKVQLSTSRVRQRPG-------MGDPEQCYRCGRGGHWS 669
NG V+ Q R R G G +CY CG GH++
Sbjct: 62 NGWRVE-QSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFA 108
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 154 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 330
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 117
Query: 331 QAIKIEAA 354
+ I +E A
Sbjct: 118 KVISVEYA 125
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 309
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 310 NGE 318
NG+
Sbjct: 167 NGK 169
Score = 37.1 bits (82), Expect = 0.011
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G + +E+ L LF+++ V E +I+ R F+ + + + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 307 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
N + + G ++ + K+FVG L EV+ LF K+GT+ + I+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 484 R 486
R
Sbjct: 139 R 139
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 309
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 310 NGE 318
NG+
Sbjct: 167 NGK 169
Score = 37.1 bits (82), Expect = 0.011
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G + +E+ L LF+++ V E +I+ R F+ + + + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 307 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
N + + G ++ + K+FVG L EV+ LF K+GT+ + I+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 484 R 486
R
Sbjct: 139 R 139
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 546
+F+ N+ + E+ FQ FG V+ + + +GFV D+ +AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 547 NGMMVDGQPMKVQLSTSRVRQRP 615
NG + G+ +KVQL +P
Sbjct: 411 NGRHLGGKKLKVQLKRDSNNGQP 433
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 309
+FI N+ + + +L F+ +G V+ + + +GFV +++ + AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 310 NGELVHGQAIKIE 348
NG + G+ +K++
Sbjct: 411 NGRHLGGKKLKVQ 423
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Frame = +1
Query: 130 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 285
+P G+ ++++G + TE DL+ G V E I+R Y FV ++ +
Sbjct: 87 LPPHGS-EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 286 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 465
EAI LN G+ IK +++ ++F+GN+ ++++ + G
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAKH-------RLFLGNVPRNWMESDIKKAANRIGPG 198
Query: 466 VE 471
V+
Sbjct: 199 VQ 200
Score = 30.7 bits (66), Expect = 0.92
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 309
++I NL T+ L+ LFE +G +++ I YGFVH A++N
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 310 NGELVHGQAIKIEAAKSRKAPSTPTTKI 393
+ G + AK + T T +
Sbjct: 330 ERYEIDGHMLDCTLAKPQADQKTNTNTV 357
Score = 29.5 bits (63), Expect = 2.1
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 25/179 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHME--NEQVGREAI 300
++F+GN+ E+D++ + G V+ ++ RN GF +E N +
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSK 232
Query: 301 QNLNGEL--VHGQAIKIEAAKSRK-----APSTPTTKIFVGNLTDKTRAPEVRELFQKFG 459
Q ++ + A + A+SR + ++ +++ NL ++ LF+ G
Sbjct: 233 QKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHG 292
Query: 460 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 612
+++ I YGFVH V A+K +DG + L+ + Q+
Sbjct: 293 KILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQK 351
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 309
+F+GN+ TE LR + + G VV +V + YGF ++E+ A +NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 310 NGELVHGQAIKIEAAKSRK 366
++G+ ++++ A++ K
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TK+FVG L +T E+R F +FG ++E I+ + YGFV +
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
Query: 532 AIKELNGMMVDGQPMKVQLSTSRVRQRP 615
A+ + N ++DG+ ++ S R RP
Sbjct: 74 AVADPN-PVIDGRKANCNIA-SFGRPRP 99
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G + TE L LF ++ V E +I+ R F+ + + I +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 307 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
N + + G + ++ + K+FVG L EV+ LF ++GT+ + I+
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL 132
Query: 484 R 486
R
Sbjct: 133 R 133
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 546
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 547 NGMMVDGQPMKVQLSTSRVRQR 612
NG + G+ +KVQL +Q+
Sbjct: 392 NGCQLSGKKLKVQLKRDNGQQQ 413
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 309
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 310 NG 315
NG
Sbjct: 161 NG 162
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G +FI N+ + + +L F+ +G V+ + + +GF+ +++ +
Sbjct: 326 GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQ 385
Query: 292 EAIQNLNGELVHGQAIKIE 348
AI +NG + G+ +K++
Sbjct: 386 NAINTMNGCQLSGKKLKVQ 404
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +1
Query: 133 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 285
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 86
Query: 286 GREAIQNLNGELVHGQAIKIEAA 354
+ +Q EL +G+ ++++ A
Sbjct: 87 VDKVLQKTFHEL-NGKMVEVKLA 108
Score = 34.3 bits (75), Expect = 0.074
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 540
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 541 ---ELNGMMVD---GQPMKVQLSTSR 600
ELNG MV+ P + L+T R
Sbjct: 94 TFHELNGKMVEVKLAVPKDMALNTMR 119
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.9 bits (84), Expect = 0.006
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 33/191 (17%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 306
K+F+G +S +T E LR F YG V + ++R+ +GFV + V +Q
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 307 LNG----------------ELVHGQAIKIEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEV 435
+ + V G+ + ++S + T KIFVG L E
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 436 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
R+ F+ +G V + I+ R +GFV D+ D D++ + G+ ++V+ +
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE-DAVDSVLHKTFHDLSGKQVEVKRA 185
Query: 592 TSRVRQRPGMG 624
+ PG G
Sbjct: 186 LPK-DANPGGG 195
Score = 34.7 bits (76), Expect = 0.056
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 300
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 301 QNLNGELVHGQAIKIEAAKSRKA 369
+L G+ ++++ A + A
Sbjct: 169 HKTFHDL-SGKQVEVKRALPKDA 190
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 379 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 552
P+ ++VGNL E+ + F +FG + R+Y FV+ + D AI+ L G
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 553 MMVDGQPMKVQLS 591
+ G P++++ +
Sbjct: 81 FPLSGNPLRIEFA 93
Score = 33.9 bits (74), Expect = 0.098
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 154 IFIG-NLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV 324
++IG S K +A LR +F +G + + + R+Y FV N +A ++L G+L
Sbjct: 153 LYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLF 212
Query: 325 HGQAIKIEAAKSRKAPS 375
+ I AKS + S
Sbjct: 213 GNPRVHICFAKSEPSSS 229
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 546
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 547 NGMMVDGQPMKVQLSTSRVRQR 612
NG + G+ +KVQL +Q+
Sbjct: 401 NGCQLSGKKLKVQLKRDNGQQQ 422
Score = 33.9 bits (74), Expect = 0.098
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G + TE L LF ++ V E +I+ R F+ + + I +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 307 L-NGELVHGQAI---------KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF 456
N + + G + ++E P K+FVG L EV+ LF ++
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEY 132
Query: 457 GTVVECDIVR 486
GT+ + I+R
Sbjct: 133 GTIKDLQILR 142
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 309
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 310 NG 315
NG
Sbjct: 170 NG 171
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 291
G +FI N+ + + +L F+ +G V+ + + +GF+ +++ +
Sbjct: 335 GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQ 394
Query: 292 EAIQNLNGELVHGQAIKIE 348
AI +NG + G+ +K++
Sbjct: 395 NAINTMNGCQLSGKKLKVQ 413
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect(2) = 0.008
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFE-------KYGTVVECDIVRNYGFVHMENEQVGREAI 300
G +++IGNL+ TTE D+R LF + G E + Y V + + V
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFK-DSVSVAIA 318
Query: 301 QNLNGELVHGQAIKIEAA-KSRKA 369
L+ +++ G+ +KI A K R A
Sbjct: 319 LKLDQQVICGRPVKICCALKDRPA 342
Score = 27.1 bits (57), Expect(2) = 0.008
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 487 NYGFVHLDATGDVNDAIKELNGM--MVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 660
N G +++ T D + L G + DG +S+S+V++R CY CG G
Sbjct: 352 NAGSYNMEDTYAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRV-------CYECGEKG 404
Query: 661 HWS 669
H S
Sbjct: 405 HLS 407
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.5 bits (83), Expect = 0.008
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKEL--- 546
++++VGNL + E+ + F+ FG V + R Y F+ + D DAI+ L
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 547 NGMMVDGQPMKVQL-STSRVRQRPGMGDPE--------QCYRCGRGGHWS 669
NG V+ + + R R G G +CY CG GH++
Sbjct: 62 NGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFA 111
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +1
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR---VRQRPGMGDPE---QCYR 645
R+Y FV D +DA L+G DG + V+ S R G P +C+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFN 62
Query: 646 CGRGGHWS 669
CG GHW+
Sbjct: 63 CGVDGHWA 70
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.1 bits (82), Expect = 0.011
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = +1
Query: 136 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 288
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 289 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTR 423
R A + ++ G+ A S P P + N+ + R
Sbjct: 79 RRACADPT-PIIDGRRANCNLA-SLGRPRPPLPYAVIPNMPGRLR 121
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Frame = +1
Query: 379 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 534
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 535 IKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
I+ L+ ++ G+ + V+ + R + P G R RG H S
Sbjct: 133 IRSLDHSVLQGRVITVEKARRRRGRTPTPG-KYLGLRTARGRHKS 176
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +1
Query: 346 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 501
E+ + + P+T +FV L+ +T + +R F +FG V + +V + +GFV
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Query: 502 HLDATGDVNDAIKELNGMMVDG 567
D I ++G +DG
Sbjct: 103 RYATLEDSAKGIAGMDGKFLDG 124
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----------RNYGFVHMENEQVGR 291
T +++GNLS K E L F ++G + I+ RN GFV N G+
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 292 EAIQNLNGELVHGQAIKIEAAKSRKAPS 375
A + G +V+ +KI K+ PS
Sbjct: 238 AAKDEMQGIIVYEYELKIGWGKAVSLPS 265
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----------RNYGFVHLDATGDVN 528
TT ++VGNL+ K + F +FG + I+ RN GFV D
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 529 DAIKELNGMMVDGQPMKV 582
A E+ G++V +K+
Sbjct: 238 AAKDEMQGIIVYEYELKI 255
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.7 bits (81), Expect = 0.014
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +1
Query: 139 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGRE 294
+G + I NL DLR FE++G + + + RNY GFV + E
Sbjct: 44 SGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
Query: 295 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTT 387
A++ +N +++ G+ I I A ++RK P T
Sbjct: 104 AMKRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
Score = 35.5 bits (78), Expect = 0.032
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +1
Query: 346 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFV 501
E SR S+ + + + NL R ++R+ F++FG + + + RNY GFV
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFV 93
Query: 502 HLDATGDVNDAIKELNGMMVDGQPMKV 582
D +A+K +N ++ G+ + +
Sbjct: 94 KYRYAEDAAEAMKRMNHKVIGGREIAI 120
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 543
++F G+L ++ + + F +F T ++R+ YGFV D+ A+KE
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 544 LNGMMVDGQPMKVQLSTSRVR 606
+NG V +P+K++ S+ + R
Sbjct: 198 MNGKYVGNRPIKLRKSSWKER 218
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 303
+++F G+L ++ + L F ++ T ++R+ YGFV N A++
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 304 NLNGELVHGQAIKI 345
+NG+ V + IK+
Sbjct: 197 EMNGKYVGNRPIKL 210
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Frame = +1
Query: 361 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDAT 516
R+ + + ++FV L+ T ++++ F FG +V+ ++ + +GFV
Sbjct: 26 RRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATI 85
Query: 517 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDP 630
D A E+N +DG + V + R +RP +P
Sbjct: 86 EDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQEP 123
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +1
Query: 484 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR---VRQRPGMGDPE---QCYR 645
R+Y FV D +DA L+G DG + V+ S R G P +C+
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFN 62
Query: 646 CGRGGHWS 669
CG GHW+
Sbjct: 63 CGVDGHWA 70
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 303
IF+ TT+ +L+ FE YG + EC +V + YGFV + + REA++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.018
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 324
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 325 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVECDIV---R 486
+ + I + + PS + V NL ++ +F G + E R
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKR 289
Query: 487 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
++ FV A+K LN + G+ +KV+ S
Sbjct: 290 HHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.018
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 324
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 325 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVECDIV---R 486
+ + I + + PS + V NL ++ +F G + E R
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKR 289
Query: 487 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 591
++ FV A+K LN + G+ +KV+ S
Sbjct: 290 HHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 36.3 bits (80), Expect = 0.018
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
++IG+L E L F G +V ++RN YGF+ + +Q
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 310 NGELVHG---QAIKIEAAK---SRKAPSTPTTKIFVGNL----TDKTRAPEVRELFQKF- 456
N + Q ++ A K +P IFVG+L TD R +
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 457 GTVVECDIV----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
G V D V + YGFV + A+ E+NG+ +PM++ + S+
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Score = 28.7 bits (61), Expect = 3.7
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 300
+ IF+G+L+ T+ L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 301 QNLNGELVHGQAIKIEAAKSRK------------APSTPT------TKIFVGNLTDKTRA 426
+NG + ++I A S+K A T T +FVG L
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 427 PEVRELFQKFGTVVECDIV--RNYGFV 501
++ +F ++G +V I + GFV
Sbjct: 275 DHLKNVFSQYGEIVHVKIPAGKRCGFV 301
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 279
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 310 NGELVHGQAIKIEAAKSRKAPSTP 381
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIK 540
T +++G L + LF FG +V ++++ YGFV N A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 541 ELNGMMVDGQPMKVQLS 591
+NG +G+ + V+++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 310 NGELVHGQAIKIEAAKSRKAPSTP 381
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIK 540
T +++G L + LF FG +V ++++ YGFV N A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 541 ELNGMMVDGQPMKVQLS 591
+NG +G+ + V+++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Frame = +1
Query: 355 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 504
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 105
Query: 505 LDATGDVNDAIKELNG 552
++ D A++ +NG
Sbjct: 106 FNSKEDAQSAVEAMNG 121
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 310 NGEL 321
NG++
Sbjct: 120 NGKV 123
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.9 bits (79), Expect = 0.024
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Frame = +1
Query: 367 APSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGD 522
APS T ++V NL ++ LF FG V ++ R FV + D
Sbjct: 53 APSKST--LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRED 110
Query: 523 VNDAIKELNGMMVDGQPMKVQLSTSRVR-----QRPGMGDPEQCYRCGRGGHWS 669
A + ++ +++G+ + V ++ R ++ D +CY CG GH S
Sbjct: 111 AAKAARSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLS 164
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 300
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E E +
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED-SVEVV 177
Query: 301 QNLNGELVHGQAIKIEAA 354
N + + ++++ A
Sbjct: 178 MQSNFHELSDKRVEVKRA 195
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 279
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +1
Query: 358 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 513
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 514 TGDV 525
V
Sbjct: 171 EDSV 174
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 543
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 86 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 145
Query: 544 LNGMMVDGQPMKVQL 588
N + +DG+PMK+++
Sbjct: 146 YNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 543
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 22 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 81
Query: 544 LNGMMVDGQPMKVQL 588
N + +DG+PMK+++
Sbjct: 82 YNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 543
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 88 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 147
Query: 544 LNGMMVDGQPMKVQL 588
N + +DG+PMK+++
Sbjct: 148 YNDVQLDGKPMKIEI 162
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
IF+ L TT +L+ FE YG + EC +V + +GFV + + R A++N
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMV 561
+ + NL + +R +FQ +G V E R FV D A++ +NG ++
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVI 244
Query: 562 DGQPMKVQLS 591
G+PM +Q S
Sbjct: 245 SGKPMVIQFS 254
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.1 bits (67), Expect(2) = 0.039
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 154 IFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 321
+ + NL+ D E L LF YG +V ++RN + V M + A+ L G +
Sbjct: 247 VLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAM 306
Query: 322 VHGQAIKIEAAK 357
+ G+ +++ +K
Sbjct: 307 LFGKRLEVNFSK 318
Score = 23.0 bits (47), Expect(2) = 0.039
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +1
Query: 349 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 495
AAK+ + +PT I + L EV Q+ G VV + G
Sbjct: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNG 391
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 145 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 321
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 322 VHGQAIKIEAA 354
+ + + +E A
Sbjct: 128 LLDKVVSVEYA 138
Score = 33.9 bits (74), Expect = 0.098
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Frame = +1
Query: 253 YGFVHMENEQVGREAIQNL-NGELVHGQA-IKIEAAKS----------RKAPST--PTTK 390
Y FV+ E+E+ +AI+ N +G+ + +E AK KA S PT
Sbjct: 11 YAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKT 70
Query: 391 IFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDG 567
+FV N +TR ++ F+ +G V+ + RN+ FV D A+ + +
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
Query: 568 QPMKVQLSTSRVRQR 612
+ + V+ + +R
Sbjct: 131 KVVSVEYALREAGER 145
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 34.7 bits (76), Expect = 0.056
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TKI+VG L TR + F++FG ++ ++V + YGFV
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Query: 532 AIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDP 630
A K+ N ++G+ +L+ + +P P
Sbjct: 70 ACKDPN-PTIEGRITNCKLAFVGAKVKPNQSQP 101
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.056
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGFVHMENEQVGR 291
G K+++GNL +E LR +FE +G V E + +GF+ + +
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 292 EAIQNLNGEL-VHGQAIKIEA 351
A LNG+L + G+ IK+ +
Sbjct: 321 AAQIALNGKLEIAGRTIKVSS 341
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.056
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +1
Query: 136 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 288
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 289 REA 297
R A
Sbjct: 79 RRA 81
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.3 bits (75), Expect = 0.074
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGREAIQN---L 309
I++GN+ T +++ F+ GTV I+ + GF ++E +V EA+QN L
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV--EAVQNSLIL 162
Query: 310 NGELVHGQAIKIEAAKS 360
N +HG+ IK+ A ++
Sbjct: 163 NESELHGRQIKVSAKRT 179
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 34.3 bits (75), Expect = 0.074
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TK+FVG L T + + F K+G ++E I+ + YGFV
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATR 73
Query: 532 AIKELNGMMVDGQPMKVQLST--SRVRQRPGMGDPEQ 636
A ++ + +++G+ L++ R+R+ P M P+Q
Sbjct: 74 ACED-STPIINGRRANCNLASLGGRLRKSPTMTSPQQ 109
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G L+ T + + F KYG ++E I+ + YGFV ++ + A ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 307 LNGELVHGQAIKIEAA----KSRKAPS 375
+ +++G+ A + RK+P+
Sbjct: 78 -STPIINGRRANCNLASLGGRLRKSPT 103
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.3 bits (75), Expect = 0.074
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +1
Query: 130 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 285
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 286 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 381
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
Score = 34.3 bits (75), Expect = 0.074
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TK+FVG L +T +R F++FG +VE ++ + YGFV
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Query: 532 AIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRG 657
A + ++DG+ L+ V QR P + GRG
Sbjct: 64 ACVD-PAPVIDGRRANCNLAAFGV-QRSKPSSPIHGHVGGRG 103
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.3 bits (75), Expect = 0.074
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +1
Query: 130 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 285
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 286 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 381
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
Score = 34.3 bits (75), Expect = 0.074
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 531
T TK+FVG L +T +R F++FG +VE ++ + YGFV
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Query: 532 AIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRG 657
A + ++DG+ L+ V QR P + GRG
Sbjct: 64 ACVD-PAPVIDGRRANCNLAAFGV-QRSKPSSPIHGHVGGRG 103
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +1
Query: 382 TTKIFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRN------YGFVHLDATGDVNDAI 537
+T +++GN++ T ++ ELF + G + + + +N + FV + D DA+
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 538 KELNGMMVDGQPMKV 582
K ++G ++D +P++V
Sbjct: 93 KYISGTILDDRPIRV 107
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.9 bits (74), Expect = 0.098
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Frame = +1
Query: 340 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 495
K + A P +FV L ++ +++ F+ +G + +V + Y
Sbjct: 123 KYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182
Query: 496 FVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 600
F+ T D+ A K+ +G +DG+ + V + R
Sbjct: 183 FIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGR 217
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 33.9 bits (74), Expect = 0.098
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 565 GQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
GQ Q + + + GD CY+CG+ GHWS
Sbjct: 321 GQSSNQQFQSGQAKSTSSTGD---CYKCGKAGHWS 352
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 580 VQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 669
VQ T V+ GD C++CG+ GHWS
Sbjct: 254 VQSDTGPVKSTSAAGD---CFKCGKPGHWS 280
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 634 QCYRCGRGGHWS 669
+CY+CG+ GHWS
Sbjct: 305 ECYKCGKQGHWS 316
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 589 STSRVRQRPGMGDPEQCYRCGRGGHWS 669
S +R Q G P CY+CG+ GHW+
Sbjct: 225 SDTRGYQNAKTGTP--CYKCGKEGHWA 249
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.9 bits (74), Expect = 0.098
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 307 LNGELVHGQAIKIEAAK---SRKAPSTP 381
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.9 bits (74), Expect = 0.098
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 307 LNGELVHGQAIKIEAAK---SRKAPSTP 381
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.9 bits (74), Expect = 0.098
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 307 LNGELVHGQAIKIEAAK---SRKAPSTP 381
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 376 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 483
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 33.9 bits (74), Expect = 0.098
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +1
Query: 379 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 534
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 535 IKELNGMMVDGQPMKVQ 585
I+ L+ ++ G+ + V+
Sbjct: 103 IRSLDHSVLQGRVITVE 119
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 513
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.13
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 294
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 295 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 471
+ ++G + Q A + KI+V N+ A + F +G V E
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.13
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 294
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 295 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 471
+ ++G + Q A + KI+V N+ A + F +G V E
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 309
+ + NL + DLR FE++G V + + R+Y GF+ + EA +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 310 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVG---NLTDKTRAP 429
+G L+ G+ + + A ++RK P+ T+ G D+ R+P
Sbjct: 99 DGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSP 142
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 540
T + V NL R ++R F++FG V + + R+Y GF+ D +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 541 ELNGMMVDGQPMKVQLSTSRVRQRP 615
+++G ++ G+ + V + R++P
Sbjct: 97 QMDGYLLLGRELTVVFAEEN-RKKP 120
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 312
+F+ NLS +T D+ + G VV ++ N+ FV + ++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 313 GELVHGQAI 339
GE HG I
Sbjct: 189 GEYFHGHKI 197
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 307 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 414
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 307 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 414
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 540
T + V NL R ++R+ F++FG V + + R+Y GFV D DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 541 ELNGMMVDGQPMKVQLSTSRVRQRP 615
++G ++ G+ + V + R++P
Sbjct: 96 HMDGYLLLGRELTVVFAEEN-RKKP 119
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 309
+ + NL + DLR FE++G V + + R+Y GFV + +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 310 NGELVHGQAIKIE-AAKSRKAPSTPTTK-IFVGNLTDKTRAP 429
+G L+ G+ + + A ++RK P+ + G D+ R P
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTP 139
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +1
Query: 145 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ----VG 288
T KIF+G L T + R FE YG V + I+ R +GFV ++E V
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 289 REAIQNLNGELV 324
+ +LNG+ V
Sbjct: 169 HKTFHDLNGKQV 180
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
K+F+G ++ T +RE F FG V++ ++ R +GFV ++ +++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 544 LNGMMVDGQPMKVQLSTSRVRQRP 615
+ +D + + V+ + SR Q P
Sbjct: 67 KH--HIDNRDVDVKRAMSREEQSP 88
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 543
T++ V NL ++RELF + G V I R G + D A+K+
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 544 LNGMMVDGQPMKVQL 588
N +++DG+PM++++
Sbjct: 153 YNNVLLDGRPMRLEI 167
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 543
TK+++ NL +++ELF + G + I R+ G + GD A+K
Sbjct: 108 TKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKR 167
Query: 544 LNGMMVDGQPMKVQL 588
N + +DG+ MK+++
Sbjct: 168 YNNVQLDGKLMKIEI 182
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 546
+ V +L+ ++E+F FG V+ +I R +G+V A D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 547 NGMMVDGQPMK 579
+G +DG+ +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 546
+ V +L+ ++E+F FG V+ +I R +G+V A D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 547 NGMMVDGQPMK 579
+G +DG+ +K
Sbjct: 160 DGAQIDGKVVK 170
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.40
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 127 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 255
+ P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 306
KIF+G L + + DLR F ++G + + I R +GFV V + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVA-DRVAR 299
Query: 307 LNGELVHGQAIKIEAA 354
+ E+ GQ + I++A
Sbjct: 300 RSHEIC-GQEVAIDSA 314
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 148 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 279
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 394 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 510
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 361 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 471
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 361 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 471
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV- 324
+++G L+ + E D+R F +G + I+ + FV + + +A Q L+ LV
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 325 HGQAIKI 345
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 31.1 bits (67), Expect = 0.69
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Frame = +1
Query: 388 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 543
+ FVG L T + F +FG V + I+ + + FV + AI
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 544 LNGMMVDGQPMKVQLSTSRVR 606
+NG +DG+ + Q S R
Sbjct: 105 MNGQELDGRNITAQARGSGTR 125
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 309
++IG + E ++ F ++GTV + RN +GF+ E+ +V A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 310 NGELVHGQAIKI 345
N L+ +K+
Sbjct: 122 NDYLLMEHMLKV 133
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 337 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 489
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 GTPFCSGVRHVYCVGNSWSLFGVHIFNLCYILLFFVHSNP*SKMPGTG-TFKIF 159
GTPF S + NS F LCYI+LF +H++ +KM G F +F
Sbjct: 67 GTPFISHSNAMLMTVNSVGA----TFQLCYIILFIMHTDKKNKMKMLGLLFVVF 116
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.7 bits (66), Expect = 0.92
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +1
Query: 307 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 486
+ G L+ + + E +K++K K+ + NL + + +++ +F G V + I +
Sbjct: 311 VKGNLIWARQLGGEGSKAQK------WKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPK 364
Query: 487 NY--------GFVHLDATGDVNDAIKELNGMMVDGQPMKV 582
N+ FV D +AIK+ NG M +P+ V
Sbjct: 365 NFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAV 404
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVG--REAIQNLN 312
+F+GN+ T +++ F+ GTV I+ + GF ++E +V +EA+Q LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 313 GELVHGQAIKIEAAKSRKAPSTPTTKIFVG 402
+HG+ +K+ +K + P K F G
Sbjct: 153 ESELHGRQLKV----LQKRTNVPGLKQFRG 178
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 628 PEQCYRCGRGGHWS 669
P C++CGR GHWS
Sbjct: 5 PTGCFKCGRPGHWS 18
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGEL-V 324
+++G L+ + E D+R F +G + I+ + FV + +A + L+ L V
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 325 HGQAIKI 345
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 391 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKEL 546
+ V N+ R E+RE F++FG V + I R+Y FV D +A + +
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 547 NGMMVDGQPMKVQLSTSRVRQRP 615
N G+ + V ++ S R+RP
Sbjct: 109 NRRSFAGREITVVVA-SESRKRP 130
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 253 YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDK 417
YGFV + + A++ NGE +H I + AK+ AP P K NL +K
Sbjct: 724 YGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT--APYPPRIKY---NLAEK 773
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.6
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Frame = +1
Query: 151 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 300
KIF+ L T L F++YG + +C V + YGF+ ++ R A+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 301 --QNLNGELVHGQAIKIEAAKSRKA--------PSTPTTKIFVGNLTDKTRAPEVRELFQ 450
+ + + Q I + P KI+V N++ ++ E F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 451 KFGTVVE 471
+FG + E
Sbjct: 249 RFGEIEE 255
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +1
Query: 520 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQR---PGMGDPE---QCYRCGRGGHWS 669
D +DA L+G DG + V+ S R G P +C+ CG GHW+
Sbjct: 26 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWA 81
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +1
Query: 385 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHLD--ATGDVNDAIKE 543
T +++ NL ++REL+ + G + I R G + D A+++
Sbjct: 107 TTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRK 166
Query: 544 LNGMMVDGQPMKVQLSTSRVRQRP 615
N +++DG+PMK+++ P
Sbjct: 167 YNNVLLDGRPMKLEILGGNTESAP 190
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGT--VVECD--IVRNYGFVHMENEQVGREAIQNLNGEL 321
+ + +L D + LF +YG V C +RN FV +NE +A + LNG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 322 VHGQAIKIEAA 354
G+ ++++ A
Sbjct: 90 FLGKVLQVQRA 100
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +1
Query: 259 FVHMENEQVGREAIQNLNGELVHG-QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEV 435
F H EN++ RE ++N N + G Q IKI + + + D A V
Sbjct: 335 FKHDENDEECREEVENSNSQGKRGDQCIKISVPTESFTLHHEVDSVSISSSGD-AYASIV 393
Query: 436 RELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKE 543
E + G V + DI+++ + +A+G V++ + +
Sbjct: 394 PECLLESGHVNDIDILQSIETID-EASGKVDEQVDD 428
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 29.1 bits (62), Expect = 2.8
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Frame = +1
Query: 268 MENEQVG-REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 444
ME E RE + E+ Q AA ++VGN+ EV+
Sbjct: 49 MEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLH 108
Query: 445 FQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 603
FQ GTV I+ + + +V V +A+ +LN + G+ +KV + V
Sbjct: 109 FQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEAL-QLNESELHGRQLKVSPKRTNV 167
Query: 604 ----RQRPGMGDPEQCYRCGR 654
+ PG +P YR R
Sbjct: 168 PGMKQYHPGRFNPSMGYRFRR 188
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 29.1 bits (62), Expect = 2.8
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Frame = +1
Query: 268 MENEQVG-REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 444
ME E RE + E+ Q AA ++VGN+ EV+
Sbjct: 49 MEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLH 108
Query: 445 FQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 603
FQ GTV I+ + + +V V +A+ +LN + G+ +KV + V
Sbjct: 109 FQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEAL-QLNESELHGRQLKVSPKRTNV 167
Query: 604 ----RQRPGMGDPEQCYRCGR 654
+ PG +P YR R
Sbjct: 168 PGMKQYHPGRFNPSMGYRFRR 188
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +1
Query: 277 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPS--------TPTTKIFVGNLTDKTRAPE 432
E V + I + G +V G A+ + +K++ + + T TK+ V N+ + E
Sbjct: 307 ELVKQGKILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKE 366
Query: 433 VRELFQKFGTV 465
VR+LF FG +
Sbjct: 367 VRQLFTPFGQI 377
>At2g38620.1 68415.m04744 cell divsion control protein, putative
similar to SWISS-PROT:P25859 cell division control
protein 2 homolog B [Arabidopsis thaliana]; contains
protein kinase domain, Pfam:PF00069
Length = 257
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = -2
Query: 564 VDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRARL----VR*ITH 397
V QLF V H +H + ++ LD +LK +AD G +R ++ TH
Sbjct: 121 VQRFMFQLFKGVAHCHSHGVLHRDLKPQNLLLDKDKGILK-IADLGLSRAFTVPLKAYTH 179
Query: 396 EYFSGWRRRRLPALGRFYF 340
E + W R LG ++
Sbjct: 180 EIVTLWYRAPEVLLGSTHY 198
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 252
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 252
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 142 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 252
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 154 IFIGNLSDKTTEADLRPLFEKYGTVVE---CDIVRNYGFVHMENEQVGREAIQNLNG 315
+FI NL +TT L+ LFE+Y E D FV E++ A+Q L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 625 DPEQCYRCGRGGHWS 669
DP CY+CG+ GH++
Sbjct: 32 DPRACYKCGKLGHFA 46
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 136 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 234
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +1
Query: 370 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV 525
P+ TKI+V L TR + F++FG +V +V + +GFV
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 526 NDAIKELNGMMVDGQPMKVQLS 591
A + N +DG+ + +L+
Sbjct: 64 TRACENPN-HTIDGRTVNCKLA 84
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 27.5 bits (58), Expect = 8.5
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +1
Query: 247 RNYGFVHMENEQVG--REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 420
+ YG V M+ ++VG R+ + +V + E+ R +FVGNL K
Sbjct: 131 KKYGSVEMKEKKVGEKRKKADEVADTMVSKEGFDDESKLLRT--------VFVGNLPLKV 182
Query: 421 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 549
+ + + F KFG VE +R+ V T +K++N
Sbjct: 183 KKKVILKEFSKFGE-VESVRIRSVPIVDSKRTRKGAIMLKQIN 224
>At5g14690.1 68418.m01721 expressed protein predicted protein,
Arabidopsis thaliana
Length = 217
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 247 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSR 363
RN+G H +N+ V E + + HG +K + + R
Sbjct: 11 RNHGGTHCQNDAVDEENRRRRHNHHTHGDEVKCSSKRCR 49
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 481 VRNYGFVHL---DATGDVNDAIKELNGMMVDGQPMKVQL 588
V + FVH ++ G DA + N +++DGQP+KV L
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCN-LILDGQPLKVSL 112
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 473 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 369
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,453
Number of Sequences: 28952
Number of extensions: 285535
Number of successful extensions: 1632
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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