Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b06
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.61 
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    27   2.5  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    27   3.3  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.3  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   4.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.6  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   7.6  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    25   10.0 

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 88  IINILGYNPILTSNRKRSAICIYSNSCLKHY 180
           +++ L YN IL +   R  + I+ N+CLK Y
Sbjct: 610 LLSFLEYNKILFTPDVRKRVIIFLNNCLKFY 640


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 463 YPRSHILINDNSGIDVFSYLRNHHGR*SNAEAEHKIA 353
           YP++  L  D+SG   F +LRNH       E  H+IA
Sbjct: 152 YPKTFSL-TDHSGKVKFDFLRNHISSMMGIEGLHQIA 187


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 517 QRWQYENPRESAVAVDGRYPR 455
           Q+WQ ENP ES    D  Y R
Sbjct: 296 QQWQKENPEESKNCFDDLYSR 316


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 437 INEDMASWIPAIHSYSALPWVFILPS 514
           +N D+  W P I     LPW+   PS
Sbjct: 143 MNWDLTQWQPIISDRQFLPWLITPPS 168


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +2

Query: 383 SPTVMIPQIRKDINSTIVINEDMASWIPAIHSYSALPWVFILPSLIRISGRKKSYILVCI 562
           +P ++  ++   +N  ++I+  +      I S +++   F+L  L R++ R++++   CI
Sbjct: 59  TPCLVFEKVGNGLNLKMLIDLSLLPVFYVIISAASILISFLLAKLFRLTPRQRNFATACI 118


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 173  STIYKYYLNRIRHVSASKDQTY*T--AFILWCWVMADLSDETNTYTRKP 313
            STI++  L ++   SA+  Q +      I W +V  DLS+ TN +   P
Sbjct: 1110 STIFEPLLRKLHIQSANIKQLFRIYRLEIFWSFVSKDLSNTTNDFLEFP 1158



 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 175  ASSNYYCIYIWQI 137
            A +NY C+Y WQ+
Sbjct: 1491 AMNNYLCLYFWQV 1503


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 202  PIQVIFIDSASSNYYCIYIWQIAYD 128
            PIQ+ F+   + NY    I  + YD
Sbjct: 1430 PIQIFFLQGENKNYVLFCIHHVLYD 1454


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 350 NCYFMFGLCVGSPTVMIPQIRKDINSTIVINE 445
           +C FMFGL + S  + IP    ++ ST VI E
Sbjct: 157 SCVFMFGLTLFSRLIQIP---FNLYSTFVIEE 185


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 278 LSDETNT-YTRKPLLRQLLISTGPWNCYFMFGL-CVGSPTVMIPQIRKDINSTIVINEDM 451
           L+D T   +T K   +  + S G  NCY      C G P + +P         +  N D 
Sbjct: 223 LTDTTEVDFTEKLKSKNAVSSCG--NCYLGDAFRCSGCPYIGMPAFNPGDTVILAENRDK 280

Query: 452 ASWI 463
            SW+
Sbjct: 281 MSWM 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,465
Number of Sequences: 5004
Number of extensions: 54846
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)