Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b06
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0099 - 20854828-20855117,20855231-20855423,20855507-208556...    31   0.84 
05_02_0148 - 7085892-7086011,7086681-7087004,7088258-7088419,708...    30   1.5  
02_04_0605 - 24290777-24290830,24290914-24291075,24291494-242916...    30   1.5  
12_01_0350 + 2682502-2682593,2684131-2684327,2684978-2685162,268...    29   2.6  
12_01_0348 - 2662510-2662565,2662634-2662943,2663573-2663734,266...    29   2.6  

>09_06_0099 -
           20854828-20855117,20855231-20855423,20855507-20855668,
           20856384-20856497
          Length = 252

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 256 QNKSSLICLVLRCAHVSYPIQVIFIDSASSNYYCIYIWQIAY 131
           + +  L+CL+L     S P + +  DS    YY I +W  AY
Sbjct: 2   EQRKFLLCLILGLLATSGPAKTVNADSPFDFYYLILMWPGAY 43


>05_02_0148 -
           7085892-7086011,7086681-7087004,7088258-7088419,
           7088866-7089066,7089148-7089332,7089459-7089588
          Length = 373

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 525 ILINDGNMKTHGRAL*LWMAGIHEAISSLMTIV 427
           I++N   M THG +    + G+H A ++LMT+V
Sbjct: 29  IMVNKALMATHGFSFATTLTGLHFATTTLMTLV 61


>02_04_0605 -
           24290777-24290830,24290914-24291075,24291494-24291694,
           24291777-24291961,24292117-24292246
          Length = 243

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 525 ILINDGNMKTHGRAL*LWMAGIHEAISSLMTIV 427
           I++N   M THG +    + G+H A ++LMT+V
Sbjct: 29  IMVNKALMATHGFSFATTLTGLHFATTTLMTLV 61


>12_01_0350 +
           2682502-2682593,2684131-2684327,2684978-2685162,
           2685253-2685453,2685834-2685995,2686421-2686741
          Length = 385

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 525 ILINDGNMKTHGRAL*LWMAGIHEAISSLMTIV 427
           I++N   M THG +    + G+H   ++LMTIV
Sbjct: 82  IMVNKALMATHGFSFATTLTGLHFVTTTLMTIV 114


>12_01_0348 -
           2662510-2662565,2662634-2662943,2663573-2663734,
           2664072-2664272,2664357-2664541,2665108-2665240
          Length = 348

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 525 ILINDGNMKTHGRAL*LWMAGIHEAISSLMTIV 427
           I++N   M THG +    + G+H   ++LMTIV
Sbjct: 30  IMVNKALMATHGFSFATTLTGLHFVTTTLMTIV 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,386
Number of Sequences: 37544
Number of extensions: 337136
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)