Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b06
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 35   0.052
SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)         30   1.5  
SB_3544| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-34)                  29   4.5  
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)              28   6.0  
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +2

Query: 365 FGLCVGSPTVMIPQIRKDINSTIVINEDMASWIPAIHSYSALPWVFILPSLIRISGRKKS 544
           FG C+G  +    Q+     + + +N D  +W  ++ +  A+    I   LI + GRK +
Sbjct: 54  FGYCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLGGPIQGFLIDLIGRKFA 113

Query: 545 YILVCIFACIGFL 583
            IL  +  C G+L
Sbjct: 114 LILTSVPFCSGWL 126


>SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)
          Length = 296

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +2

Query: 356 YFMFGLCVGSPTVMIPQIRKDINSTIVINEDMASWIPAIHSYSALPWVFILPSLIRISGR 535
           +F F +   SP   +      + + I I+    + +P +    A+ W F+L  L+ + G 
Sbjct: 183 WFSFWISPDSPPARVGLGITTVLTMITISNSARAPLPKVSYTKAIDW-FLLMCLVYVFGA 241

Query: 536 KKSYILVCIFAC 571
              Y +V  +AC
Sbjct: 242 LMEYAIVNFYAC 253


>SB_3544| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-34)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/58 (24%), Positives = 33/58 (56%)
 Frame = +2

Query: 497 VFILPSLIRISGRKKSYILVCIFACIGFLTHYCSKTIIHVIISEVLKGVLTASHFTVS 670
           + ++ S+I I G   + +++ +  CI  +    +  I++V +S+++  +LTA H  +S
Sbjct: 25  IIVVLSIIIIVGVIGNSMVIAVVGCIPSMKTTTNFLIVNVAVSDIITLLLTALHVGLS 82


>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
          Length = 956

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 86  QSLIFLVITLFLQVIVSDLPYVYTVI 163
           Q+++++  TLF+ V VSD+ YV ++I
Sbjct: 592 QTVLWVGFTLFIAVAVSDISYVISII 617


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -2

Query: 310 LSCISVSFITQISHYPAPQNKSSLICLVLRCAHVSYPIQVIFIDSASSNYYCIYIWQIAY 131
           L C+ V     ++   +  ++S   C +L      Y   V F+ + SSN+Y I +W  A+
Sbjct: 570 LKCLDVLSCFSVNVASSKNSESKFWCELL--VTDKYNASVKFLSNISSNHYSISVWGSAF 627


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,685
Number of Sequences: 59808
Number of extensions: 397466
Number of successful extensions: 924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)