Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b06
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22010.1 68417.m03185 multi-copper oxidase type I family prot...    30   1.6  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    29   2.8  
At4g11390.1 68417.m01837 DC1 domain-containing protein contains ...    28   5.0  
At1g34020.1 68414.m04218 transporter-related low similarity to U...    28   5.0  
At4g09810.1 68417.m01610 transporter-related low similarity to U...    28   6.6  

>At4g22010.1 68417.m03185 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 493 RESAVAVDGRYPRSHI--LINDNSGIDVFSYLR 401
           ++  + ++G++P  HI  + NDN  I VF+YL+
Sbjct: 43  KQQGILINGQFPGPHIDAITNDNIIISVFNYLK 75


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 416 DINSTIVINEDMASWIPAIHSYSALPWVFILPS 514
           ++N+   +N D++ W P I     LPW+  +PS
Sbjct: 234 NVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPS 266


>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 514

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 548 ILVCIFACIGFLTHYCSKTIIHVIISEV 631
           +L CI +C GF+  +C  T+  V++  V
Sbjct: 288 VLTCIESCCGFVLCFCCATLPQVVMHRV 315


>At1g34020.1 68414.m04218 transporter-related low similarity to
           UDP-sugar transporter [Drosophila melanogaster]
           GI:14971008, UDP-glucuronic acid transporter [Homo
           sapiens] GI:11463949
          Length = 335

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 525 ILINDGNMKTHGRAL*LWMAGIHEAISSLMTIV 427
           I++N   M T+G +    + G+H A ++LMT+V
Sbjct: 29  IIVNKALMATYGYSFATTLTGLHFATTTLMTLV 61


>At4g09810.1 68417.m01610 transporter-related low similarity to
           UDP-sugar transporter [Drosophila melanogaster]
           GI:14971008,  UDP-glucuronic acid transporter [Homo
           sapiens] GI:11463949
          Length = 335

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 525 ILINDGNMKTHGRAL*LWMAGIHEAISSLMTIV 427
           I++N   M T+G +    + G+H A ++LMT+V
Sbjct: 29  IIVNKALMATYGFSFATTLTGLHFATTTLMTLV 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,425,025
Number of Sequences: 28952
Number of extensions: 276757
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)