Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b05
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.20
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.46
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 0.60
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 1.4
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 1.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 1.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 4.3
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 4.3
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 4.3
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 5.6
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 24 7.4
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 24 7.4
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 24 7.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 7.4
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 24 7.4
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 24 9.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 9.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 24 9.8
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 24 9.8
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.20
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 298 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 182
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.46
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 158 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 262
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 0.60
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 111 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 260
A+ L +++ T+ + P +T ET ++ S+ T T+ + TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 1.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 93 PTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 257
PT++ T T ++ T T + + TT+ + T + T T P + T+ LP++
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 152 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 250
PK PN N +P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 184 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 291
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 142 DVRAVVNRFVAVSLSVG-HSQQSEDENHEEF 53
+VR V NRFVAV L G DE ++F
Sbjct: 1056 NVRRVTNRFVAVKLDCGIDGNIKADEVSDDF 1086
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 155 KDYNPNGNGYEPIDNGAYYVDPPQGRP 235
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 396 FFFKHYNMFIYLFR*HKFI*NFEI 325
FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 393 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 298
FF YN FI+ F+ FI ++ Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 78 LCWLWPTLKETATNLLTTARTS 143
+ W W TL TA +L+TA S
Sbjct: 1 MIWFWSTLLVTAIAVLSTANES 22
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 122 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 208
+++ PY+ N D+N NGN P+ +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 24.2 bits (50), Expect = 7.4
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 SPVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDN 199
+P+ H F+ A A+ N N Y PI PY N PN PI
Sbjct: 388 TPLTAPIHATESFWPSAAAAAAAVHN-NANSYMPITPTPYPNNAKIFGYPNQPPLTPIPF 446
Query: 200 GAYYVDP-PQGR 232
+ + P P GR
Sbjct: 447 TGFVLHPAPVGR 458
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 101 QGNGYEPIDNRPYIVNPPKDYNPNGNGY 184
QG G + D PY ++P Y P G Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.2 bits (50), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 107 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 259
N Y PI VNP Y P+G G+ V PP+ +P + P P
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPK-QPANRVVPLP 1023
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 7.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 74 LALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 208
LAL ++ Q Y I+ P N P +N N N + I AY
Sbjct: 86 LALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAF-LISTNAY 129
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 184 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 291
+T+ R L P L Y + WC+ E+KN L
Sbjct: 217 KTFLLRARLLNGLDVPNLQNVYDWVWCTYDELKNKL 252
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 23.8 bits (49), Expect = 9.8
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -1
Query: 277 LPTASTR-ERGRLEVRSALG---RVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVA 110
L TA R E+ ++ V+ G IC ++ + A+S + + VNR V+
Sbjct: 1027 LATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVNRLVS 1086
Query: 109 VSLSVGHSQQSEDE 68
+ + V ++ S D+
Sbjct: 1087 IKMMVDSAKDSSDK 1100
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +2
Query: 95 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 250
N + N EP+ PPK+ N N + +P + V +P PT
Sbjct: 220 NEEVNNLEPVGQNESKQEPPKEENSNVSQEQP-EQAQPEVSAASEQPESNPT 270
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 124 NRFVAVSLSVGHSQQSEDENHE 59
NRF+ + L VG + ++ +NH+
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQ 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,181
Number of Sequences: 5004
Number of extensions: 35699
Number of successful extensions: 120
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -