Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b04
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0340 + 15981210-15981467                                         27   5.5  
08_01_0984 - 9952630-9954132                                           27   7.2  

>08_02_0340 + 15981210-15981467
          Length = 85

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 72  MAGESAVSTASKPQMR-GLLNAVIKRNIIVALALSGVAGFT 191
           MA   A    ++PQ+R GL+ A I  ++I ALA  GV G T
Sbjct: 1   MATTLADEKQNQPQIRFGLIVACILLDVIPALAAEGVDGDT 41


>08_01_0984 - 9952630-9954132
          Length = 500

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 297 GIDPSCASPQIPFQH 253
           G+DP C SP +P +H
Sbjct: 194 GVDPGCLSPDMPSKH 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,030
Number of Sequences: 37544
Number of extensions: 139947
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)