Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b04
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY029256-1|AAK32965.1|   77|Drosophila melanogaster cytochrome c...    77   6e-15
AE014134-909|AAF52241.3|   77|Drosophila melanogaster CG14028-PA...    77   6e-15
AY070808-1|AAL48430.1|   87|Drosophila melanogaster AT20031p pro...    47   1e-05
AE014134-976|AAN10559.1|   87|Drosophila melanogaster CG31644-PA...    47   1e-05
DQ138878-1|ABA86484.1|  939|Drosophila melanogaster CG17075 prot...    29   3.0  
AE014134-68|AAF51524.1|  968|Drosophila melanogaster CG17075-PA ...    29   3.0  
AY058482-1|AAZ67515.1|  172|Drosophila melanogaster GM13045p pro...    27   6.8  
AE014297-1255|AAF54603.1|  172|Drosophila melanogaster CG4800-PA...    27   6.8  
AL031027-9|CAA19838.1| 1012|Drosophila melanogaster EG:80H7.7 pr...    27   9.0  

>AY029256-1|AAK32965.1|   77|Drosophila melanogaster cytochrome c
           oxidase subunit VIc protein.
          Length = 77

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 38/78 (48%), Positives = 49/78 (62%)
 Frame = +3

Query: 72  MAGESAVSTASKPQMRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTY 251
           MA   A S+A  P +RGL NA IKRN+ V+L L+ V    +K L+ + +K  YA+FY  Y
Sbjct: 1   MANTPATSSAG-PVLRGLHNATIKRNLAVSLGLTAVVTIAYKILVNDPKKAAYADFYSKY 59

Query: 252 DAEKEFEEMRKKGLFQSC 305
           DA K FE M+  G FQSC
Sbjct: 60  DANKSFERMKAAGRFQSC 77


>AE014134-909|AAF52241.3|   77|Drosophila melanogaster CG14028-PA
           protein.
          Length = 77

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 38/78 (48%), Positives = 49/78 (62%)
 Frame = +3

Query: 72  MAGESAVSTASKPQMRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTY 251
           MA   A S+A  P +RGL NA IKRN+ V+L L+ V    +K L+ + +K  YA+FY  Y
Sbjct: 1   MANTPATSSAG-PVLRGLHNATIKRNLAVSLGLTAVVTIAYKILVNDPKKAAYADFYSKY 59

Query: 252 DAEKEFEEMRKKGLFQSC 305
           DA K FE M+  G FQSC
Sbjct: 60  DANKSFERMKAAGRFQSC 77


>AY070808-1|AAL48430.1|   87|Drosophila melanogaster AT20031p
           protein.
          Length = 87

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = +3

Query: 144 RNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 305
           RN+ +A  L+ +A   F  L  N RKRKY  FY TYD    F+ M   G   SC
Sbjct: 20  RNVKMACTLALLAPLLFYTLHNNPRKRKYRNFYSTYDPMDAFDRMMSGGYLSSC 73


>AE014134-976|AAN10559.1|   87|Drosophila melanogaster CG31644-PA
           protein.
          Length = 87

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = +3

Query: 144 RNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 305
           RN+ +A  L+ +A   F  L  N RKRKY  FY TYD    F+ M   G   SC
Sbjct: 20  RNVKMACTLALLAPLLFYTLHNNPRKRKYRNFYSTYDPMDAFDRMMSGGYLSSC 73


>DQ138878-1|ABA86484.1|  939|Drosophila melanogaster CG17075
           protein.
          Length = 939

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 217 RSLPMSCLKVKPATPERAKATIMLRLMTALRRPR 116
           + LP+      P  P  ++   MLRL+   RRPR
Sbjct: 663 QELPLKATTATPTPPRSSRLRYMLRLLGRYRRPR 696


>AE014134-68|AAF51524.1|  968|Drosophila melanogaster CG17075-PA
           protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 217 RSLPMSCLKVKPATPERAKATIMLRLMTALRRPR 116
           + LP+      P  P  ++   MLRL+   RRPR
Sbjct: 686 QELPLKATTATPTPPRSSRLRYMLRLLGRYRRPR 719


>AY058482-1|AAZ67515.1|  172|Drosophila melanogaster GM13045p
           protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 197 LEGKTSDARESQSNNNVTFDDGVEETSHLRLARC 96
           LEG  + A E+    ++T + GV+   + RL  C
Sbjct: 44  LEGANASAEEADEGTDITSESGVDVVLNHRLTEC 77


>AE014297-1255|AAF54603.1|  172|Drosophila melanogaster CG4800-PA
           protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 197 LEGKTSDARESQSNNNVTFDDGVEETSHLRLARC 96
           LEG  + A E+    ++T + GV+   + RL  C
Sbjct: 44  LEGANASAEEADEGTDITSESGVDVVLNHRLTEC 77


>AL031027-9|CAA19838.1| 1012|Drosophila melanogaster EG:80H7.7
           protein.
          Length = 1012

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 194 EGKTSDARESQSNNNVTFDDGVEETSHLRL 105
           E K  + R S +N N+ +++GV E  HL++
Sbjct: 294 ELKIMNLRPSANNKNLVWEEGVPEKFHLKI 323


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,374
Number of Sequences: 53049
Number of extensions: 242410
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)