Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b04
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi...    30   0.64 
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    29   1.1  
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi...    28   2.6  
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po...    28   2.6  
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    27   3.4  
At3g26580.1 68416.m03318 expressed protein                             27   4.5  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   4.5  
At4g20290.1 68417.m02963 expressed protein                             27   6.0  
At2g37380.1 68415.m04584 expressed protein                             27   6.0  
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    26   7.9  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    26   7.9  

>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 763

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 120 GLLNAV-IKRNIIVALALSGVA---GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 278
           GL+NAV     I   L + G+    GF  +  +GN     YA+F    DA+K FE++
Sbjct: 377 GLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDI 433


>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 183 GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGL 293
           GF F   +GN     Y    +T DA K F+EM ++ +
Sbjct: 143 GFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179


>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 850

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 159 ALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 278
           A ALS V GF     +GN     Y+      DA K F+EM
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188


>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
           potassium channel protein identical to SKOR [Arabidopsis
           thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
           6 transmembrane (1P/6TM) Shaker K+ channel family,
           PMID:11500563
          Length = 828

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 212 ITNELLEGKTSDARESQSNNNVTFDDGVEE 123
           I N LLEGK S+ R  Q  +++TF    +E
Sbjct: 516 ILNNLLEGKESNVRIKQLESDITFHISKQE 545


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 177 VAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKK 287
           V G   + L+G+   + Y +F+R  DA K F+ M +K
Sbjct: 147 VDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183


>At3g26580.1 68416.m03318 expressed protein 
          Length = 350

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 204 IGNERKRKYAEFYRTYDAEKEFEEMRKK 287
           +  ERKR+  EF+ T + E++ EE++ K
Sbjct: 113 VEKERKRRAKEFHDTKELERKAEELQYK 140


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 180 AGFTFKQLIGNERKRKYAEFYRTYDAEKE 266
           A F    L+    KR + EF+ TYDA  E
Sbjct: 149 ANFVHLSLLSKYYKRGFREFFLTYDANAE 177


>At4g20290.1 68417.m02963 expressed protein 
          Length = 118

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 195 KQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 290
           K+  G E+KR+ +      D E+E EE R+KG
Sbjct: 13  KERGGEEKKRRRSALNSEEDEEEEEEEGRRKG 44


>At2g37380.1 68415.m04584 expressed protein 
          Length = 321

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  NFSKIIIRHGWRKCSIDSEQASDARS 124
           +FS +I RH   KCS  S  +S A S
Sbjct: 228 SFSGVIQRHSQAKCSTSSSSSSSASS 253


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 236 FSILSLALITNELLEGKTSDARESQSNNNVTFDDGVEETSHLRLARCRYCT 84
           F   +  ++ + L+ G+     ES+S +++TF DG   +    L    Y T
Sbjct: 60  FEYFNALVLRDWLIRGRRLSESESESESSLTFSDGNSTSRISSLGFLHYTT 110


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 180 AGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 305
           AG     ++ N     YA+F R Y   K F+EM  +     C
Sbjct: 76  AGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYC 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,912,965
Number of Sequences: 28952
Number of extensions: 114349
Number of successful extensions: 387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)