Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b03
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   2.5  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   3.3  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   4.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   5.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   10.0 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   10.0 

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +2

Query: 173 ELENDERIATIITDLITLSNEVDSVAFGPSEN------------FKKISITFDDHWYIIC 316
           ++++ ERI  ++ D IT S   DS+   P EN              K  I +  +WY + 
Sbjct: 102 DIDSSERIR-LVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDIKWSKYWYQLL 160

Query: 317 LSNKK 331
           L NKK
Sbjct: 161 LGNKK 165


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 647 LHPKPSVLPKQALLNGSRLRNNIVLSKRSSLTFIMPNIS*PTFLITHALIINVIHLNNI 471
           L P PS+    AL        N +L+K +  T  +P    P F I H  + N I+L  I
Sbjct: 336 LQPCPSLAEWDALRKVWLFITNKLLNKDNMYTAWIPLRHPPIFYIGHVPVFNDIYLTKI 394


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 30/102 (29%), Positives = 40/102 (39%)
 Frame = +2

Query: 83  KIVAAIMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPS 262
           K V AI   +   IGY V    GAVL      E D R   ++ D  +L   +  ++    
Sbjct: 407 KDVTAISQVLWGSIGYSVGAMFGAVLAVHDSKEPDRRTILVVGD-GSLQLTITEISTCIR 465

Query: 263 ENFKKISITFDDHWYIICLSNKKIYVVKRNIHTPLRESNEIN 388
            N K           II + N   Y ++R IH      NEIN
Sbjct: 466 HNLKP----------IIFIINNDGYTIERLIHGLHASYNEIN 497


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 123 IWSGILSIIAATIFTIQ*LGVGGNSKNKNYEPVNL 19
           +WS +L+++   +FT+  L    N+ N +Y+P +L
Sbjct: 703 VWSTVLAVLQRDVFTLYNL----NTPNLSYDPKDL 733


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 626 LPKQALLN----GSRLRNNIVLSKRSSLTF-IMPNIS*PTFLITHALIINVIHLN 477
           LP+ + LN    G R+  +    +  +L    +P  S P F+ T  L++  +H+N
Sbjct: 264 LPQSSFLNFNSSGKRVSVSAAAQQHKNLFLPYLPQASLPKFIGTGKLLVGTLHIN 318


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 89  VAAIMDKIPDQIGYLVLTEDGAVLESGGE---LENDERIATIITDLITLSNEVDSVAFGP 259
           + +I++KI +++ Y+ +  D        E   ++ +E     IT+   +SNE+D    G 
Sbjct: 226 MTSILEKIFERLKYIDVKTDSEDFWDASEEHSIKGEEFHYKKITEGDEISNEIDPFGIGS 285

Query: 260 SENFKKISITFDD 298
                ++ ++F D
Sbjct: 286 IREVFRVLVSFID 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,415
Number of Sequences: 5004
Number of extensions: 49295
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)