Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10b03
(676 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130559-1|AAI30560.1| 99|Homo sapiens similar to CG14977-PA p... 74 5e-13
BC130553-1|AAI30554.1| 99|Homo sapiens similar to CG14977-PA p... 74 5e-13
BC105609-1|AAI05610.1| 99|Homo sapiens similar to CG14977-PA p... 74 5e-13
BC063401-1|AAH63401.1| 99|Homo sapiens similar to CG14977-PA p... 74 5e-13
BC043595-1|AAH43595.1| 541|Homo sapiens RFT1 homolog (S. cerevi... 71 5e-12
AJ318099-1|CAC69544.1| 541|Homo sapiens putative endoplasmic re... 71 5e-12
BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sortin... 30 8.6
BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sortin... 30 8.6
AY453586-1|AAS49034.1| 390|Homo sapiens vacuolar protein sortin... 30 8.6
AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sortin... 30 8.6
AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sortin... 30 8.6
AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sortin... 30 8.6
AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens ... 30 8.6
AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sortin... 30 8.6
>BC130559-1|AAI30560.1| 99|Homo sapiens similar to CG14977-PA
protein.
Length = 99
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/83 (42%), Positives = 61/83 (73%)
Frame = +2
Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
+++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ + + G + FK++
Sbjct: 9 LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66
Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
S+ F +H ++ +S ++++VVKR
Sbjct: 67 SVVFGEHTLLVTVSGQRVFVVKR 89
>BC130553-1|AAI30554.1| 99|Homo sapiens similar to CG14977-PA
protein.
Length = 99
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/83 (42%), Positives = 61/83 (73%)
Frame = +2
Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
+++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ + + G + FK++
Sbjct: 9 LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66
Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
S+ F +H ++ +S ++++VVKR
Sbjct: 67 SVVFGEHTLLVTVSGQRVFVVKR 89
>BC105609-1|AAI05610.1| 99|Homo sapiens similar to CG14977-PA
protein.
Length = 99
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/83 (42%), Positives = 61/83 (73%)
Frame = +2
Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
+++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ + + G + FK++
Sbjct: 9 LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66
Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
S+ F +H ++ +S ++++VVKR
Sbjct: 67 SVVFGEHTLLVTVSGQRVFVVKR 89
>BC063401-1|AAH63401.1| 99|Homo sapiens similar to CG14977-PA
protein.
Length = 99
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/83 (42%), Positives = 61/83 (73%)
Frame = +2
Query: 101 MDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKI 280
+++IPDQ+GYLVL+E GAVL S G+LENDE+ A+ I++L++ + + G + FK++
Sbjct: 9 LERIPDQLGYLVLSE-GAVLASSGDLENDEQAASAISELVSTACGF-RLHRGMNVPFKRL 66
Query: 281 SITFDDHWYIICLSNKKIYVVKR 349
S+ F +H ++ +S ++++VVKR
Sbjct: 67 SVVFGEHTLLVTVSGQRVFVVKR 89
>BC043595-1|AAH43595.1| 541|Homo sapiens RFT1 homolog (S.
cerevisiae) protein.
Length = 541
Score = 70.5 bits (165), Expect = 5e-12
Identities = 32/87 (36%), Positives = 52/87 (59%)
Frame = +1
Query: 415 ARNILMSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXS 594
++ +L + AS +L+Q+LFR ITF++NA+++R + EI+G++NVR +
Sbjct: 3 SQEVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLA 62
Query: 595 REPFNRACLGRTDGFGWSHLINQIWLS 675
RE F RACL WS +N +WL+
Sbjct: 63 REAFRRACLSGGTQRDWSQTLNLLWLT 89
>AJ318099-1|CAC69544.1| 541|Homo sapiens putative endoplasmic
reticulum multispan transmembrane protein protein.
Length = 541
Score = 70.5 bits (165), Expect = 5e-12
Identities = 32/87 (36%), Positives = 52/87 (59%)
Frame = +1
Query: 415 ARNILMSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXS 594
++ +L + AS +L+Q+LFR ITF++NA+++R + EI+G++NVR +
Sbjct: 3 SQEVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLA 62
Query: 595 REPFNRACLGRTDGFGWSHLINQIWLS 675
RE F RACL WS +N +WL+
Sbjct: 63 REAFRRACLSGGTQRDWSQTLNLLWLT 89
>BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246
>BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246
>AY453586-1|AAS49034.1| 390|Homo sapiens vacuolar protein sorting
45A isoform protein.
Length = 390
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 32 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 66
>AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 316
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 143 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 177
>AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246
>AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sorting
45A variant protein.
Length = 570
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246
>AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45. ).
Length = 570
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246
>AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sorting
45 isoform protein.
Length = 570
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 463 LIQILFRC---ITFIINAWVIRNVGHEILGIMNVR 558
L+ IL RC IT ++N W + + HE+LGI N R
Sbjct: 212 LLLILDRCDDAITPLLNQWTYQAMVHELLGINNNR 246
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,302,310
Number of Sequences: 237096
Number of extensions: 1591383
Number of successful extensions: 2198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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