Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b02
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.13 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.93 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.93 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +3

Query: 462 PWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVY 614
           P I L   WM L    +++ +    + P +   + +W PL++   + T+++
Sbjct: 494 PLIELIEHWMPLLPNWILENILDMLVLPKLTLEVEEWNPLTDTVPIHTWIH 544


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 612 RHKCSIFLFHSTVPIYPALCACSDRELLVSSLESIDMWPDP 490
           R K     FH T  IY +LC   ++ LL   L S +    P
Sbjct: 32  RTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERP 72


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 612 RHKCSIFLFHSTVPIYPALCACSDRELLVSSLESIDMWPDP 490
           R K     FH T  IY +LC   ++ LL   L S +    P
Sbjct: 32  RTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERP 72


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 494 SGHMSIDSRDDTSSSLSEHAHNAG*MGTVE*KRKIEHL 607
           S H S   R    SSL +H H    +G  + ++ I+ L
Sbjct: 112 SEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQQL 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,776
Number of Sequences: 438
Number of extensions: 4651
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)