Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a21
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    29   3.8  
At5g58250.1 68418.m07293 expressed protein                             28   5.0  
At5g44050.1 68418.m05390 MATE efflux family protein similar to r...    28   6.6  
At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SD...    28   6.6  
At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc ...    27   8.7  
At2g16970.1 68415.m01955 expressed protein  ; expression support...    27   8.7  

>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 512 WSHTVTML-LWYH*FYNHTCTWPSENCR 432
           +S   T+L + Y  F NHT  WPS +CR
Sbjct: 58  YSQWKTLLPILYDSFVNHTLVWPSLSCR 85


>At5g58250.1 68418.m07293 expressed protein
          Length = 211

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 319 QVWHDSYRATKLDESIKYSPYTIE 248
           +V +DS+ AT LDE++  +P T+E
Sbjct: 156 RVLYDSFEATSLDEALASNPTTLE 179


>At5g44050.1 68418.m05390 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 491

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 563 LILSITHRLIIGFFLSILLY 622
           +I+S+T  LIIG  +S+L+Y
Sbjct: 343 MIISVTQSLIIGIIISVLIY 362


>At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 312

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 117 MFRWSHTGTWGVIRYVCIIV 176
           +F+ + TGTW V +YVCI++
Sbjct: 159 VFKTNLTGTWLVSKYVCILM 178


>At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc
           family protein similar to phenylalanine-tRNA synthetase
           [Homo sapiens] GI:3983103; contains Pfam profile
           PF01409: tRNA synthetases class II core domain (F)
          Length = 429

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 394 SLFNEILLGPSRRSKHFI*IIDSHRQVWHDSYRATKLDESIKYSPYTIETKSNFVSITI 218
           S+F+++ +   RR KH I I+ +    + DS  + K ++    SP  + TK NF  + +
Sbjct: 80  SIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEKFEDLSP-IVTTKQNFDDVLV 137


>At2g16970.1 68415.m01955 expressed protein  ; expression supported
           by MPSS
          Length = 414

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 560 FLILSITHRLIIGFFLSILL 619
           F +L +T  L+IGFFLS+L+
Sbjct: 375 FSLLCVTFSLMIGFFLSLLI 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,414,679
Number of Sequences: 28952
Number of extensions: 269007
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)