Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a20
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    30   0.30 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.5  

>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 QLNPVYSAWSRRLWPLHCVFQDWPESHP*NSSLN 296
           +L P+ S+WS R W  +   +++PE  P    LN
Sbjct: 367 KLEPIESSWSGRKWEFYSYAKEFPELFPDAYKLN 400


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 311 IRLSTSLCVYSYLLVTALNKFRFTNIQLITYGQDAAXTDYWNVI 442
           I+ +T + + +YLL T ++   FT I L TY    + +D ++++
Sbjct: 493 IKTATLVFIINYLLRTDIDSTFFTTIFLNTYASMISSSDLFSIL 536


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 189 IGQLNPVYSAWSRRLWPLHCVF 254
           +   NP    WSR+L  L CVF
Sbjct: 514 VSNCNPSKPTWSRKLRLLQCVF 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,706
Number of Sequences: 5004
Number of extensions: 35136
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)