Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a20
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570...    29   2.2  
06_03_0870 + 25557988-25558309,25558798-25559011,25559110-255593...    29   3.8  
05_06_0161 + 26078019-26078510                                         27   8.7  
03_02_0517 + 9054816-9055655                                           27   8.7  

>05_02_0024 -
           5702501-5702664,5703219-5703393,5703716-5704099,
           5705787-5705864,5706015-5706140
          Length = 308

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 304 HYDTSVHQLMCIQLFTCYRSE 366
           HYDTS+ Q+    LFT YR E
Sbjct: 257 HYDTSILQIKPFDLFTFYREE 277


>06_03_0870 +
           25557988-25558309,25558798-25559011,25559110-25559342,
           25559473-25559630,25559900-25560001
          Length = 342

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 447 TSVIIVTDFTFVMYLADLNHRQLLIAIMYWCYYCSYFIAH 566
           +S+++VT    ++++   +   L + + +WC  CS F  H
Sbjct: 70  SSLLLVTYAWLILHIRSYDRSILFLDLYWWCPLCSSFRGH 109


>05_06_0161 + 26078019-26078510
          Length = 163

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 AWSRRLWPLHCVFQDWPESHP*NSSLNRVTL 308
           AW RR WP    +  WP + P +  L R+ L
Sbjct: 2   AWQRRCWPRAQRWCRWPSTSPHDPLLPRLLL 32


>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 525 IMYWCYYCSYFI 560
           + YWCY+CS F+
Sbjct: 6   VSYWCYHCSRFV 17


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,900
Number of Sequences: 37544
Number of extensions: 235934
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)