Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a20
         (605 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB066962-1|BAC02000.1|  119|Homo sapiens immunoglobulin heavy ch...    31   3.1  
DQ065638-1|ABA00050.1|  130|Homo sapiens immunoglobulin epsilon ...    31   4.2  
AY640486-1|AAT65095.1|  124|Homo sapiens immunoglobulin E variab...    30   7.3  

>AB066962-1|BAC02000.1|  119|Homo sapiens immunoglobulin heavy chain
           VHDJ region protein.
          Length = 119

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 264 ANLETRSARAKDGGTMHCRRGLIDQWNITV 175
           A L+ RS RA+D    +C RG  D WN+ V
Sbjct: 79  AYLQIRSLRAEDTALYYCARGKDDFWNMDV 108


>DQ065638-1|ABA00050.1|  130|Homo sapiens immunoglobulin epsilon
           heavy chain variable region protein.
          Length = 130

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 258 LETRSARAKDGGTMHCRRGLIDQWN-ITVRHHY 163
           +E RS R+ D    +C RGL D WN  +  +HY
Sbjct: 81  MELRSLRSDDTAVYYCARGLHDFWNEYSDNNHY 113


>AY640486-1|AAT65095.1|  124|Homo sapiens immunoglobulin E variable
           region protein.
          Length = 124

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 264 ANLETRSARAKDGGTMHCRRGLIDQWNITVRHHY 163
           A +E RS R+ D    +C R L   W+I   ++Y
Sbjct: 76  AYMELRSLRSDDTAVYYCARSLSSSWHIIYYYYY 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,065,972
Number of Sequences: 237096
Number of extensions: 1243254
Number of successful extensions: 1985
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)