Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10a17
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 47 1e-05
SB_18908| Best HMM Match : efhand (HMM E-Value=5.5e-31) 38 0.007
SB_3425| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 33 0.27
SB_10944| Best HMM Match : efhand (HMM E-Value=7.4e-24) 33 0.27
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12) 32 0.36
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 32 0.36
SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12) 32 0.48
SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14) 32 0.48
SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15) 31 0.63
SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24) 31 0.63
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 31 0.83
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39) 31 0.83
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43) 31 1.1
SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23) 30 1.5
SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25) 30 1.5
SB_23229| Best HMM Match : efhand (HMM E-Value=6.8e-25) 30 1.9
SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22) 30 1.9
SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26) 29 2.5
SB_45680| Best HMM Match : DUF1174 (HMM E-Value=9.4) 29 3.4
SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3738| Best HMM Match : efhand (HMM E-Value=8.5e-05) 29 3.4
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_54208| Best HMM Match : fn3 (HMM E-Value=0) 28 5.9
SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12) 28 5.9
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64) 28 5.9
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 28 7.7
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 47.2 bits (107), Expect = 1e-05
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Frame = +1
Query: 70 AFFDTNGSGTIDKKDFELAIERISKSRGWSAGDAQYKEVQDTLLKVWDGLSSADTDNDGQ 249
+ FD +GSGTI ++ E+ + KS G + D +E+Q + +V D D +G+
Sbjct: 7 SLFDKDGSGTISNEELEV----VMKSLGQNPSD---EELQQMIQEV-------DADGNGE 52
Query: 250 VSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFG--LDKAE 423
V EE++++ +K + + F++ D + DGSI E SV AS G L E
Sbjct: 53 VDFEEFLAMMKKQMQHRDAEAEM--REAFRVFDRNGDGSISEWELRSVMASLGEKLSDDE 110
Query: 424 AASAFQKLS-KGKSSVSFAEFQELFKE 501
++ G ++F EF ++ +E
Sbjct: 111 IKEMMREADLDGDGVINFQEFVQMVRE 137
>SB_18908| Best HMM Match : efhand (HMM E-Value=5.5e-31)
Length = 156
Score = 37.9 bits (84), Expect = 0.007
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +1
Query: 229 DTDNDGQVSKEEWIS-LWEKFSSSPSDWQNLYCKF-----IFQLEDASNDGSIDSEEFSS 390
D D G VS +E+ + + +K + D ++ Y K +F+ D GSID EEF
Sbjct: 59 DKDGSGSVSFDEFYTWIHDKNTLQNIDDKSRYHKIRKAIEMFKKYDKDASGSIDREEFKQ 118
Query: 391 VYASFGLDKAEAASAFQKLSK-GKSSVSFAEF 483
+ G +K A +KL K G +SF EF
Sbjct: 119 LMHETG-NKVNIDKALKKLDKDGNGQISFTEF 149
>SB_3425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = +1
Query: 193 TLLKVWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSID 372
T+ ++ D L++ D + DG + +E++++ F ++ + F++ D + DG I
Sbjct: 176 TISQILDILNAFDKNGDGAIDFDEFVTMSRYFRGRGAEKLEENLRQAFRVFDRNGDGYIS 235
Query: 373 SEEFSSVYASFG--LDKAEAASAFQKLSK-GKSSVSFAEFQELFKE 501
+EE + G L + EA L + G + + EF + K+
Sbjct: 236 AEELRVAVTTLGDALTQDEAEELIGMLDQDGDGKLGYEEFVVIAKK 281
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/92 (21%), Positives = 42/92 (45%)
Frame = +1
Query: 235 DNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLD 414
+ DG+ KEEW SLW+ S D + C+F + + ++ + ++ FG++
Sbjct: 791 ETDGR--KEEWTSLWDYHKSKLED-SIMICEFEQDISKVNLLIEQNNRDLIALNQKFGVN 847
Query: 415 KAEAASAFQKLSKGKSSVSFAEFQELFKEYFA 510
++ + Q+ SV A + +K + +
Sbjct: 848 LLDSVTLLQESDAFLESVKIASMETRWKRFLS 879
>SB_10944| Best HMM Match : efhand (HMM E-Value=7.4e-24)
Length = 127
Score = 32.7 bits (71), Expect = 0.27
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Frame = +1
Query: 28 VSDFRKKKLLHVFTAFFDTNGSGTIDKKDFELAIERISKSRGWSA---------GDAQYK 180
+++ +K+++ F FDT+GSGTID K EL E+ SK A G +K
Sbjct: 23 LTEEQKQEIREAFD-LFDTDGSGTIDAK--ELKSEKDSKEEILKAFKLFDDDETGKISFK 79
Query: 181 EVQDTLLKVWDGLS---------SADTDNDGQVSKEEWISLWEKFS 291
++ ++ + L+ AD D DG++++ E++ + +K S
Sbjct: 80 NLKRVAKELGENLTDEELQEMIDEADRDGDGEINEAEFLRIMKKTS 125
>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
Length = 923
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 229 DTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVY 396
D DN+G ++ +E+ SLW+ +DWQ + + D + G+ID E + Y
Sbjct: 23 DRDNNGTINFQEFSSLWKYI----TDWQTTFRNY-----DRDSSGTIDKNELQNGY 69
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +1
Query: 163 GDAQYKEVQDTLLKVWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQL 342
G + +E +T L++ G+ D DG +S E+++ +E P + K IFQL
Sbjct: 720 GMQRIEEYNETTLELLAGV--VDQTKDGLISFSEFVA-FEALLRDPDS----HHKLIFQL 772
Query: 343 EDASNDGSIDSEEFSSV 393
D GS+ +EF +V
Sbjct: 773 FDLDGKGSVSYDEFRNV 789
>SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)
Length = 387
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +1
Query: 172 QYKEVQDTLLKVWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDA 351
+Y+ ++D +++ + L D + DG VS E+ + + DW + + D
Sbjct: 200 EYEYMKDVVVE--ETLDDIDKNKDGYVSLEDDLYPESEKEDEEPDWVKTEREQFLTVRDK 257
Query: 352 SNDGSIDSEEFSS--VYASFGLDKAEAASAFQKLSKGKSSVS 471
+ DG +D +E V A F AE + K VS
Sbjct: 258 NRDGKMDKDEVRDWIVPADFDHVGAEVTHLINEADVNKGGVS 299
>SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14)
Length = 133
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +1
Query: 325 KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 504
K F + D + DG ID E+ +YAS G + S+++F F LF E
Sbjct: 34 KEAFNMIDQNRDGFIDKEDLKDMYASLGKSPNDQFLDDMIEEASGSTINFTMFLTLFGEK 93
Query: 505 FASED 519
D
Sbjct: 94 LNGTD 98
>SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15)
Length = 150
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 334 FQLEDASNDGSIDSEEFSSVYASFGLD--KAEAASAFQKLS-KGKSSVSFAEFQELFKEY 504
F+L D D IDS + V G + AE ++ +G + +SF EF +++ Y
Sbjct: 17 FELYDKQGDEKIDSSQLGEVLRGLGQNPTNAEVKKIVSEMDPEGGNRISFEEFLPVYQSY 76
Query: 505 FASEDVNAPGNFV 543
+ + +FV
Sbjct: 77 MGKKPKFSTEDFV 89
>SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)
Length = 176
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 190 DTLLKVWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSI 369
D + ++ D DN G +S EE++SL P QN + + + DA +G +
Sbjct: 39 DEIRRLGKRFRKLDLDNSGSLSVEEFMSL-------PELQQNPLVQRVITIFDADGNGEV 91
Query: 370 DSEEFSSVYASFGL 411
D +EF + F +
Sbjct: 92 DFKEFIEGVSQFSV 105
>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 31.1 bits (67), Expect = 0.83
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 310 QNLYCKFIFQLEDASND--GSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEF 483
Q++YC+F+ + S D +++ + S V AE S F K K S+VSF
Sbjct: 729 QDVYCRFLLSYDLLSQDEKSTLEEQVKSEVQDRSTRTDAEKESQFVKKGKYHSAVSFQRV 788
Query: 484 QELFKEYF 507
+E+F
Sbjct: 789 ARNTQEHF 796
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 31.1 bits (67), Expect = 0.83
Identities = 27/94 (28%), Positives = 46/94 (48%)
Frame = +1
Query: 217 LSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVY 396
+ AD D DGQV+ +E + E+F P D ++ ++ ++++ SN EE + ++
Sbjct: 115 IREADIDGDGQVNYDEDSLVEERF---PIDTRS----YLRRIQELSNGVGHHPEEAAPIF 167
Query: 397 ASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFK 498
++ L K +A S F G S E Q L K
Sbjct: 168 VTWRLVK-QARSPFDAQGVGHRDKSTNEPQGLIK 200
>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 250
Score = 31.1 bits (67), Expect = 0.83
Identities = 27/94 (28%), Positives = 46/94 (48%)
Frame = +1
Query: 217 LSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVY 396
+ AD D DGQV+ +E + E+F P D ++ ++ ++++ SN EE + ++
Sbjct: 115 IREADIDGDGQVNYDEDSLVEERF---PIDTRS----YLRRIQELSNGVGHHPEEAAPIF 167
Query: 397 ASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFK 498
++ L K +A S F G S E Q L K
Sbjct: 168 VTWRLVK-QARSPFDAQGVGHRDKSTNEPQGLIK 200
>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
Length = 779
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 226 ADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEF 384
AD + DG +S++E L EK+ SD + + ++ D ++DG +D +EF
Sbjct: 550 ADDNRDGTISRDELRRLLEKYCLPVSD---EHFEMLWGHCDVNSDGHVDFQEF 599
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +1
Query: 235 DNDGQVSKEEWIS-LWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGL 411
D GQ S +E + L E S D + + KF + + DG + +EF V S GL
Sbjct: 647 DLTGQKSADECMEILKEHISQRSPDIRKTFIKF----NNVNGDGKLSRKEFREVLDSLGL 702
Query: 412 ----DKAEAASAFQKLSKGKSSVSFAEFQELFKE 501
D+ SA KGK +++ +F + F++
Sbjct: 703 YMTDDQYRILSARLGFHKGK--LTYRDFLDNFQD 734
>SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)
Length = 308
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 205 VWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEE 381
+ + + D D DG +S +E++ +E+ DW + D + DG +D E
Sbjct: 188 ILETIEDIDRDKDGLISLKEFLGEYEEEPGEVPDWVKDETNRFNEEYDKNKDGKLDKSE 246
>SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25)
Length = 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1
Query: 58 HVFTAFFDTNGSGTIDKKDFELAIERISKSRGWSAGDAQYKEVQDTLLKVWDGLSSADTD 237
HVF F D NG GTID ++F A+ S+ G + K LK W S D D
Sbjct: 67 HVFRTF-DANGDGTIDFREFICALSVTSR------GKLEQK------LK-W-AFSMYDLD 111
Query: 238 NDGQVSKEEWISL 276
+G +S++E + +
Sbjct: 112 GNGYISRQEMLEI 124
>SB_23229| Best HMM Match : efhand (HMM E-Value=6.8e-25)
Length = 191
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 58 HVFTAFFDTNGSGTIDKKDFELAIERISKSR 150
HVF F D NG GTID ++F A+ S+ +
Sbjct: 67 HVFRTF-DANGDGTIDFREFICALSVTSRGK 96
>SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22)
Length = 132
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 331 IFQLEDASNDGSIDSEEFSSVYASFGLDKA--EAASAFQKLSK-GKSSVSFAEFQEL 492
+F + D N GSID++E V G + + E K G + FA+F +L
Sbjct: 8 VFSMFDKDNSGSIDTDELRDVMRELGENPSDKEIQDMIADADKDGSGEIRFAQFMQL 64
>SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 325 KFIFQLEDASNDGSIDSEEFSSVYASFGL---DKAEAASAFQKLSKGKSSVSFAEFQEL 492
K F D + DG ID+EE V S GL D+ A Q G + EF EL
Sbjct: 18 KNAFMSFDKNGDGRIDAEELGIVMRSIGLHPKDEELKAMIKQADKDGSGDIDLPEFIEL 76
>SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)
Length = 776
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 58 HVFTAFFDTNGSGTIDKKDFELAIERISKSR 150
HVF F D NG GTID ++F A+ S+ +
Sbjct: 67 HVFRTF-DKNGDGTIDFREFICALSVTSRGK 96
>SB_45680| Best HMM Match : DUF1174 (HMM E-Value=9.4)
Length = 212
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -3
Query: 569 ILQKLVFPKTKFPGAFTSSEAKYSLNNSWNSAKETDDLPLDSF*KADAASALSRP 405
IL + V P+T+ P +S+ + S + +S+K + DLP + S LSRP
Sbjct: 129 ILAEPVKPETETPAVHSSTVGETSTATAPSSSKNSTDLPCVPTLRFGVDSLLSRP 183
>SB_59274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +1
Query: 52 LLHVFTAFFDTNGSGTIDKKDFELAIERISKSRGWSAGDAQYKEVQDTLLKVWDGLSSAD 231
LLH+ F D + +++K +L IER + + +KE+Q L K W
Sbjct: 40 LLHLSNDFRDLDFKHNLEEK-LKL-IERAETLATYENVNDAFKELQQ-LHKAWK------ 90
Query: 232 TDNDGQVSKEEWISLWEKFSSS 297
++ G VSKE+ +W+KFS +
Sbjct: 91 -EDVGPVSKEQREEVWQKFSDA 111
>SB_3738| Best HMM Match : efhand (HMM E-Value=8.5e-05)
Length = 447
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 76 FDTNGSGTIDKKDFELAIERI 138
FD+NG GTID ++ +LA+ +
Sbjct: 69 FDSNGGGTIDAEELDLALRSV 89
>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 193 TLLKVWDGLSSADTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSID 372
T + V + + D+D DG++S E+ L + ++L F L D DGS++
Sbjct: 198 TSVLVQENMEMLDSDKDGKISFAEYAGLDGTGEDNQDSLKSLKDDFNNDL-DKDKDGSLN 256
Query: 373 SEEFSSV 393
+ F +V
Sbjct: 257 KDNFLTV 263
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 245 AKSPKKSGFPSGRSFPAAPVTGRIYTAS 328
A P SGF G + PAAP G++ TA+
Sbjct: 906 ASLPAPSGFTFGSTSPAAPAFGQLATAA 933
>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1292
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 164 PALQPLDLDILSMASSKSFLSMVPLPLVSKKAV 66
P++ PL+L + ++ +S F+S PLP S V
Sbjct: 404 PSMPPLNLTVTNITTSSFFVSWSPLPADSANGV 436
>SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12)
Length = 146
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 229 DTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFG 408
D D G++ +E++S S D + ++ F++ D +NDGSI E + ++
Sbjct: 72 DDDRSGRIDFKEFMSSLSVTSRGNLDEK---LEWAFRIYDINNDGSISRMEMIEIIEAYK 128
Query: 409 LDKAEAASAFQKLS 450
+ ++ +S S
Sbjct: 129 VGRSNRSSQIDSSS 142
>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
Length = 1294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 384 EFLAVDGPVITSILKLKYKLAV*ILPVTGAAGKLLPEGNPLFFGDL 247
E +AVD I L+L +KL + LP+ A L E N GD+
Sbjct: 594 EIVAVDVAAIVPALELTFKLGLSYLPLAQAGLAALEEWNASLPGDV 639
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Frame = +1
Query: 211 DGLSSADTDNDGQVSKEEWISLWEKFSSSP------SDWQNLYCKFI---FQLEDASNDG 363
D S D + D ++S+EE + K + + WQ+ + + + F+ ED DG
Sbjct: 220 DMFSHMDENGDRKLSREEVSAYMRKQAEAQFAPTYDQRWQHHHERMVDNVFEYEDHDEDG 279
Query: 364 SIDSEEFS 387
I EEFS
Sbjct: 280 HISHEEFS 287
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 292 WKTSPRGKSTLLWRLGRRYRCQRCSTHPRPSKACLELLCTEH 167
WK+ PRG + L R +C++C P K C EL T +
Sbjct: 1882 WKSCPRGTYSNTPGLSRSGQCKQCD----PGKFCGELHATSY 1919
>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +1
Query: 58 HVFTAFFDTNGSGTIDKKDFELAIERISKSRGWSAGDAQYKEVQDTLLKVWDGLSSADTD 237
HVF F D N GTID +F + IS+ ++T L+ W D+D
Sbjct: 70 HVFRTF-DKNNDGTIDFNEFIQGLSIISRGS------------KETKLR-W-AFEIYDSD 114
Query: 238 NDGQVSKEEWISL 276
G+VSK+E + +
Sbjct: 115 GSGEVSKKEMLEI 127
>SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 KKLLHVFTAFFDTNGSGTIDKKDFELAIE-RISKSR 150
K++ F AF DT+GSGTID +F + + +SK+R
Sbjct: 78 KEVKRTFEAF-DTDGSGTIDFDEFLIRLRPPMSKAR 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,626,977
Number of Sequences: 59808
Number of extensions: 446128
Number of successful extensions: 1438
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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