Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a12
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)               30   1.5  
SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         30   1.5  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   2.6  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)
          Length = 424

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 562 SVLTRTATTWPSESTASIVSEPSGTCSPLNTTKTICSTS 678
           S    TATTWP  +T++++   S T +  N+T T  S S
Sbjct: 343 STSNSTATTWP-PATSTLLQSASSTATSSNSTSTATSMS 380


>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 381 DGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 515
           D L   L +  HG DG L F D ++ TS +++  F  +W+  + +
Sbjct: 127 DCLLYILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 94  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 225
           +IPTS     R SFTI   +P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 94  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 225
           +IPTS     R SFT+   +P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 154  PITTVRLKRASIYTR-RRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRTSSVIVSQL 330
            P T +   R+S  T  RRR +++Q+  T  Y+ T  T+    +   SR   T ++ VS  
Sbjct: 3951 PTTGISESRSSSVTSIRRRFENNQLEET--YKRTETTSLVMDVQERSRESTTLAIDVSPR 4008

Query: 331  SSDLSSPKTP 360
            +  ++SP+TP
Sbjct: 4009 APSVTSPRTP 4018


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 580 ATTWPSESTASIV-SEPSGTCSPLNTTKTICSTST 681
           ATT P  +TAS+V + P  T +P  TT ++ +T++
Sbjct: 757 ATTAPEATTASLVTTAPEATTAPETTTASLATTAS 791



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 559 ESVLTRTATTWPSESTASIV-SEPSGTCSPLNTTKTICSTS 678
           E+     ATT P  +TAS+V + P  T +P  TT ++ +T+
Sbjct: 732 ETTTASLATTAPETTTASLVTTAPEATTAPEATTASLVTTA 772


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -3

Query: 449 TVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGV 270
           TVA+    ++   I +    +  ++V +     G D SE  ++  T +VL ALE + + +
Sbjct: 71  TVAKTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDI 130

Query: 269 LHAVHL 252
            H VH+
Sbjct: 131 AHGVHV 136


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = +3

Query: 120  LEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 299
            L   L N I  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 300  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSND 410
            +  +  C P +  L   + A+ L   +D L      D
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQED 904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,872,180
Number of Sequences: 59808
Number of extensions: 398455
Number of successful extensions: 4385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)