Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a11
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    30   1.4  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      27   7.6  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    27   7.6  

>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 RTCLDVNPNDSQHTCRVVELASNTAIA 421
           R C+ +N ND Q +CR V+L     IA
Sbjct: 221 RCCVKLNKNDKQTSCRTVDLQKQLMIA 247


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 452 CNKDNCNGAGSISFSLPLATFA 517
           C KD CNGAG +S    +A F+
Sbjct: 107 CGKDKCNGAGKVSTIFVVAMFS 128


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 116 ETGYCIKCYQCNSEQDKNCGDPFKSAKPPV--ECNTQDSI 229
           + GYC KC+   SE++K C        P    +CN+ +++
Sbjct: 130 KNGYCNKCFYKCSEREKYCAKSCGFCTPGTCKDCNSLETL 169


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 320 MKSGTVVRTCLDVNPNDSQ---HTCRVVELASNTAIADSAKVKSCAVCNKDNCNGAGSIS 490
           +K  T  + C  +  ++ Q   +TC  +   SN++   +AK   C  C KD CN   ++ 
Sbjct: 85  LKWTTYTKGCATLREDNDQIPTNTCYELGQVSNSS-GYTAKRMDC-YCQKDFCNSTTNLG 142

Query: 491 FSLPLATFALIATYFV 538
            SL + T   + + FV
Sbjct: 143 GSL-IMTILFVLSIFV 157


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 179 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 352
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 179 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 352
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 179 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 352
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,647
Number of Sequences: 27780
Number of extensions: 281971
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)