Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a08
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    29   0.42 
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    28   1.3  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.3  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   3.0  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   3.9  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   5.2  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   9.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.1  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  FLNYKVIASFQNVWRFHLFEECFDRVEHSLRGCSKHLDFSHS-LWASV 233
           F N +VI +    WR  ++E    + E SL+   +  D  H+ LW  V
Sbjct: 383 FFNARVIIALYVEWRLRVYETMIIKGEESLKNLQRARDGPHNKLWLGV 430


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 197 LATTT*RMFNAIKAFFEQVKPPHILKASNNFVIKKILILLGL 72
           L T    +F AIK  F   K  +++KA N  +   ++ LLG+
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQLIQHGLIRLLGI 265


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 374 FCFWYSFRLLVLVWQLTPSSKRCWL 448
           FC+W +  LLV +W + P S+R ++
Sbjct: 167 FCYWGNILLLVYIW-IFPESRRLFI 190


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +1

Query: 52  IRLLKFDNPSKISIFLITKLLLAFKMCGGFTCSKNALIALNILYVVVASI------LISV 213
           I L K   P K  +  IT+ L    MC  F    + +IA+  + +   ++      LIS+
Sbjct: 313 ILLPKLPLPEKNKLHFITQSLQTGVMCS-FLAFIDTVIAVKAISLQTNNLIRSNRELISL 371

Query: 214 TVYGQASSLVTNLPIVGGIL 273
                 SSL   LPI GG L
Sbjct: 372 GAANIGSSLFCGLPICGGYL 391


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 249 LAHCRWYTSMWSISHLNLHIGACRSSQASPS 341
           L HC   +++   + +N H+ +C +S +SPS
Sbjct: 156 LVHCPACSNLVPHNQINQHLDSCLNSPSSPS 186


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 391 FSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQV 492
           FS+AC C+A+ +    M   + W +V    K+++
Sbjct: 194 FSLACGCIAMAARVIGMKLPKDWYRVFDTTKEEI 227


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 448  QQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGIN 600
            QQG N   MD  +  +   +   F ++   N   + PS AVV  I   G++
Sbjct: 851  QQGGNPTPMDRARAARLAMRAIRFFETCRANDLGNDPSSAVVIGIRGTGVS 901


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 213  HSLWASVIPGYQLAHCRWYTSMWSISHLNLHI 308
            +++W  VI G  L   RW    WS S L +++
Sbjct: 2205 NNVWFPVIFGLGLICPRWCLEFWSSSGLGINL 2236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,563
Number of Sequences: 5004
Number of extensions: 54630
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)