BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10a08 (634 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 31 0.78 SB_53252| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.4 SB_33259| Best HMM Match : RVT_1 (HMM E-Value=4.3e-12) 30 1.4 SB_19684| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.4 SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.4 SB_26377| Best HMM Match : HIPIP (HMM E-Value=9.1) 29 2.4 SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10) 29 2.4 SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 4.1 SB_21599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12) 28 5.5 SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_27092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_20112| Best HMM Match : EGF (HMM E-Value=0) 28 7.2 SB_59720| Best HMM Match : GARS_N (HMM E-Value=9.24857e-44) 28 7.2 SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) 28 7.2 SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 27 9.6 SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_58952| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 27 9.6 SB_7343| Best HMM Match : EGF (HMM E-Value=0) 27 9.6 >SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) Length = 919 Score = 31.1 bits (67), Expect = 0.78 Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Frame = +1 Query: 154 NALIALNILYVVVASILISVTVYGQASSLVTN---LPIVGGILACGVFXXXXXXXXXXXX 324 N ++ + + ++ I + +T Q +SL++N + + G ++A G Sbjct: 23 NTILLFSGIAILAVGIWV-ITSRSQYNSLLSNDNYVTVPGLMIAAGCLVIIVCVVGCVAV 81 Query: 325 VKHHQVMLFFYMVILFLLFLVQFSIACACLAVNSE 429 +K ++ +L Y+++L L+F+++ + + SE Sbjct: 82 IKENRFILVSYLIMLVLIFILEIATGVVAVIYRSE 116 >SB_53252| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 366 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 323 APASPNMEIKMRNTPHASIPPTMGKLVTRDDA 228 +PASP R T H S+P T G L R +A Sbjct: 315 SPASPETSPASRETSHPSVPSTPGSLWYRQEA 346 >SB_33259| Best HMM Match : RVT_1 (HMM E-Value=4.3e-12) Length = 303 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 323 APASPNMEIKMRNTPHASIPPTMGKLVTRDDA 228 +PASP R T H S+P T G L R +A Sbjct: 252 SPASPETSPASRETSHPSVPSTPGSLWYRQEA 283 >SB_19684| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 617 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 323 APASPNMEIKMRNTPHASIPPTMGKLVTRDDA 228 +PASP R T H S+P T G L R +A Sbjct: 566 SPASPETSPASRETSHPSVPSTPGSLWYRQEA 597 >SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 943 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 318 RSSQASPSYAVLLHGNTIPFV 380 +SS+ SP +A+ LHGN PFV Sbjct: 797 KSSEGSPCFALDLHGNRKPFV 817 >SB_26377| Best HMM Match : HIPIP (HMM E-Value=9.1) Length = 102 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%) Frame = +3 Query: 219 LWASVIPGYQLAHCRWYT-----SMWSISHLNLH 305 LW +IP Y + C YT +WS+ HL H Sbjct: 46 LWTPMIPSYLIGQCSVYTISFWYILWSLCHLQGH 79 >SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10) Length = 691 Score = 29.5 bits (63), Expect = 2.4 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%) Frame = +1 Query: 355 YMVILFLLFLVQFSIACACLAVNSEQQEMLAQQGWNKVD-MDVKQ------QVQERFQCC 513 + V+L L+F+++ + A + + + N VD D K+ +VQ F+CC Sbjct: 406 FAVLLALIFVLEIAAGALAYAYKGKLEGYVRTGLKNGVDHYDKKEYKKAMDKVQGEFKCC 465 Query: 514 GFQDST---FTNTTADHPSCAVVNAI-----CCKGI 597 G++DS + N+T SC N C KG+ Sbjct: 466 GYEDSNDHGYKNSTVP-KSCKDTNGTVFSKNCVKGL 500 >SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 514 Score = 29.1 bits (62), Expect = 3.1 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +3 Query: 99 NYKVIASFQNVWRFHLFEECFD---RVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWY 269 +Y ASF NV + +L E CF E + + L + A + GY+ RW Sbjct: 255 DYSRFASFANVIQMNLSEHCFAVSYPGELMVTMMGRGLGYEAKKNAMMHSGYEATMKRWQ 314 Query: 270 TSMWSISHLNLHIGACR 320 SI HIG R Sbjct: 315 DHEKSIKDAVAHIGLTR 331 >SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) Length = 406 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -3 Query: 320 PASPNMEIKMRNTPHASIPPT 258 P PN I TPH SIPPT Sbjct: 236 PLIPNTSIPPTPTPHTSIPPT 256 >SB_21599| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 28.3 bits (60), Expect = 5.5 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%) Frame = +3 Query: 219 LWASVIPGYQLAHCRWYT-----SMWSISHLNLH 305 LW +IP Y C YT +WS+ HL H Sbjct: 39 LWTPMIPSYLKGQCHVYTISFWYILWSLCHLQGH 72 >SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12) Length = 854 Score = 28.3 bits (60), Expect = 5.5 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +3 Query: 156 CFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCR 263 C + SL+ +KH F SL S LAHC+ Sbjct: 765 CLQITDRSLKALAKHSKFLQSLNVSKTKELHLAHCK 800 >SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 514 Score = 28.3 bits (60), Expect = 5.5 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 13/124 (10%) Frame = +1 Query: 268 ILACGVFXXXXXXXXXXXXVKHHQVMLFFYMVILFLLFLVQFSIACACLAVNSEQQEMLA 447 I+A G F +K H+ +L + +LF++ V+ + ++ +E L Sbjct: 329 IIAVGAFIALVSFFGCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLG 388 Query: 448 Q----------QGWNKVDMDVKQQVQERFQCC---GFQDSTFTNTTADHPSCAVVNAICC 588 + + + D +Q++ +CC GF+D + T + S +V CC Sbjct: 389 KDMNDTIVSYGEKGKEGITDAYDAIQKKEKCCGINGFKDWQRSYYTKGNHS--IVPDSCC 446 Query: 589 KGIN 600 K ++ Sbjct: 447 KTVS 450 >SB_27092| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 102 Score = 27.9 bits (59), Expect = 7.2 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Frame = +3 Query: 219 LWASVIPGYQLAHCRWYT-SMWSISHLNLHIGACRSSQASP 338 LW +IP Y C YT S W I H+ S +P Sbjct: 46 LWTPMIPSYLKGQCHVYTISFWYILWSLCHLQGYTQSTCAP 86 >SB_20112| Best HMM Match : EGF (HMM E-Value=0) Length = 2112 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 538 NTTADHPSCAVVNA-ICCKGINTTNCQCEP 624 N D P+ A N +C G+NT +C+C P Sbjct: 488 NDPNDCPANACQNGGVCIDGMNTYSCKCHP 517 >SB_59720| Best HMM Match : GARS_N (HMM E-Value=9.24857e-44) Length = 200 Score = 27.9 bits (59), Expect = 7.2 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -3 Query: 161 KAFFEQVKPPHILKASNNFVIKKILIL 81 KAF E PP++LKA K +LIL Sbjct: 136 KAFLETFNPPYVLKADGLAAGKGVLIL 162 >SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) Length = 416 Score = 27.9 bits (59), Expect = 7.2 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 556 PSCAVVNAICCKGINTTNCQCEPCME 633 P C + +C G T+NC CE C + Sbjct: 120 PCCNEITGLCGNG--TSNCNCEACTD 143 >SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4085 Score = 27.9 bits (59), Expect = 7.2 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 475 PYQLYSIPVEPTSLAARS*LPNKHKQSKTVPKT 377 P++ Y P+ TSL A S LP +Q + P T Sbjct: 4033 PFEQYECPIYRTSLRASSLLPAASQQISSPPST 4065 >SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 323 Score = 27.5 bits (58), Expect = 9.6 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Frame = +1 Query: 412 LAVNSEQQEMLAQQGWNKVDMDVKQQV--QERFQCCGFQDSTFTNTTADHPSC---AVVN 576 L ++EQ LAQ GW KV +K ++R T D C V N Sbjct: 229 LPKDNEQGNKLAQSGWRKVRESLKAITGREKRKDIAHMSMLELTKLFEDIRECRYLRVGN 288 Query: 577 AICCKG--INTTNCQCEPC 627 +G +NT C+C C Sbjct: 289 HTSYRGDSVNTKQCKCIAC 307 >SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) Length = 357 Score = 27.5 bits (58), Expect = 9.6 Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 13/178 (7%) Frame = +1 Query: 118 AFKMCGGFTCSKNALIALNILYVVVASILISVTVYGQASSLVTNLPIVGGILACGVFXXX 297 AF +C GF + I ++ V IL+ + S+L +L +V I F Sbjct: 57 AFSICNGFLWLTSLGITTFGIFSFVMEILVRLENRLSNSTLAISLTVV--IFGAASFILC 114 Query: 298 XXXXXXXXXVKHHQVMLFFYMV-ILFLLFLVQFSIACACLAVNSEQQEMLAQQGW--NKV 468 +K + +++ I F + ++ F I + V ++ +E++ + N Sbjct: 115 TLGCSRKPSIKQLRFYRSSFVIFITFEIIVMVFGIIQSS-RVPTDTREIVNWSVFILNYQ 173 Query: 469 DMDVKQQ---VQERFQCCGFQD------STFTNTTADHPSCAVVNAICCK-GINTTNC 612 D ++ +Q+ +CCGF+D + + + ++ S V A CCK I+ + C Sbjct: 174 DDSIRDDLDSIQKNLKCCGFKDYNDWELNPYYSCKSNGYSRCSVPASCCKLDISGSRC 231 >SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2162 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Frame = +1 Query: 508 CCGFQDSTFTNTTADH-PSCAVVNAICCKGINTTNCQC 618 C + TF D P+ N C GIN CQC Sbjct: 681 CLSGFNGTFCEVNIDDCPAIGCNNGTCIDGINNYTCQC 718 >SB_58952| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 27.5 bits (58), Expect = 9.6 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +1 Query: 556 PSCAVVNAICCKGINTTNCQCEPCME 633 P C V +C GI NC CE C + Sbjct: 48 PCCNEVTGMC--GIGKANCTCESCTD 71 >SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) Length = 286 Score = 27.5 bits (58), Expect = 9.6 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Frame = +1 Query: 490 VQERFQCCG------FQDSTFTNTTADHPSCAVVNAICCKGINTTNCQC 618 +Q RF+CCG +Q + + + ++ P+ V CCK N QC Sbjct: 157 IQTRFKCCGIESYKDWQANRYFSCSSPVPTACGVPFSCCKKSIQGNRQC 205 >SB_7343| Best HMM Match : EGF (HMM E-Value=0) Length = 1233 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +1 Query: 472 MDVKQQVQERFQCCGFQDSTFTNTTADHPSCA----VVNAICCKGINTTNCQCEP 624 +D+ +++ + C T N + CA + +C G+N+ +C C+P Sbjct: 184 LDINAGLRDAYNCSCVPGFTGKNCEINIDDCASRPCLNGGLCVDGVNSYSCLCQP 238 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,406,065 Number of Sequences: 59808 Number of extensions: 416289 Number of successful extensions: 1078 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1075 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1584657875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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