Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10a08
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 31 0.78
SB_53252| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.4
SB_33259| Best HMM Match : RVT_1 (HMM E-Value=4.3e-12) 30 1.4
SB_19684| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.4
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.4
SB_26377| Best HMM Match : HIPIP (HMM E-Value=9.1) 29 2.4
SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10) 29 2.4
SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 4.1
SB_21599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12) 28 5.5
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_27092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 28 7.2
SB_59720| Best HMM Match : GARS_N (HMM E-Value=9.24857e-44) 28 7.2
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) 28 7.2
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 27 9.6
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_58952| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 27 9.6
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 27 9.6
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 154 NALIALNILYVVVASILISVTVYGQASSLVTN---LPIVGGILACGVFXXXXXXXXXXXX 324
N ++ + + ++ I + +T Q +SL++N + + G ++A G
Sbjct: 23 NTILLFSGIAILAVGIWV-ITSRSQYNSLLSNDNYVTVPGLMIAAGCLVIIVCVVGCVAV 81
Query: 325 VKHHQVMLFFYMVILFLLFLVQFSIACACLAVNSE 429
+K ++ +L Y+++L L+F+++ + + SE
Sbjct: 82 IKENRFILVSYLIMLVLIFILEIATGVVAVIYRSE 116
>SB_53252| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 366
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 323 APASPNMEIKMRNTPHASIPPTMGKLVTRDDA 228
+PASP R T H S+P T G L R +A
Sbjct: 315 SPASPETSPASRETSHPSVPSTPGSLWYRQEA 346
>SB_33259| Best HMM Match : RVT_1 (HMM E-Value=4.3e-12)
Length = 303
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 323 APASPNMEIKMRNTPHASIPPTMGKLVTRDDA 228
+PASP R T H S+P T G L R +A
Sbjct: 252 SPASPETSPASRETSHPSVPSTPGSLWYRQEA 283
>SB_19684| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 617
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 323 APASPNMEIKMRNTPHASIPPTMGKLVTRDDA 228
+PASP R T H S+P T G L R +A
Sbjct: 566 SPASPETSPASRETSHPSVPSTPGSLWYRQEA 597
>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 943
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 318 RSSQASPSYAVLLHGNTIPFV 380
+SS+ SP +A+ LHGN PFV
Sbjct: 797 KSSEGSPCFALDLHGNRKPFV 817
>SB_26377| Best HMM Match : HIPIP (HMM E-Value=9.1)
Length = 102
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = +3
Query: 219 LWASVIPGYQLAHCRWYT-----SMWSISHLNLH 305
LW +IP Y + C YT +WS+ HL H
Sbjct: 46 LWTPMIPSYLIGQCSVYTISFWYILWSLCHLQGH 79
>SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)
Length = 691
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Frame = +1
Query: 355 YMVILFLLFLVQFSIACACLAVNSEQQEMLAQQGWNKVD-MDVKQ------QVQERFQCC 513
+ V+L L+F+++ + A + + + N VD D K+ +VQ F+CC
Sbjct: 406 FAVLLALIFVLEIAAGALAYAYKGKLEGYVRTGLKNGVDHYDKKEYKKAMDKVQGEFKCC 465
Query: 514 GFQDST---FTNTTADHPSCAVVNAI-----CCKGI 597
G++DS + N+T SC N C KG+
Sbjct: 466 GYEDSNDHGYKNSTVP-KSCKDTNGTVFSKNCVKGL 500
>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 99 NYKVIASFQNVWRFHLFEECFD---RVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCRWY 269
+Y ASF NV + +L E CF E + + L + A + GY+ RW
Sbjct: 255 DYSRFASFANVIQMNLSEHCFAVSYPGELMVTMMGRGLGYEAKKNAMMHSGYEATMKRWQ 314
Query: 270 TSMWSISHLNLHIGACR 320
SI HIG R
Sbjct: 315 DHEKSIKDAVAHIGLTR 331
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 320 PASPNMEIKMRNTPHASIPPT 258
P PN I TPH SIPPT
Sbjct: 236 PLIPNTSIPPTPTPHTSIPPT 256
>SB_21599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Frame = +3
Query: 219 LWASVIPGYQLAHCRWYT-----SMWSISHLNLH 305
LW +IP Y C YT +WS+ HL H
Sbjct: 39 LWTPMIPSYLKGQCHVYTISFWYILWSLCHLQGH 72
>SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12)
Length = 854
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 156 CFDRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCR 263
C + SL+ +KH F SL S LAHC+
Sbjct: 765 CLQITDRSLKALAKHSKFLQSLNVSKTKELHLAHCK 800
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Frame = +1
Query: 268 ILACGVFXXXXXXXXXXXXVKHHQVMLFFYMVILFLLFLVQFSIACACLAVNSEQQEMLA 447
I+A G F +K H+ +L + +LF++ V+ + ++ +E L
Sbjct: 329 IIAVGAFIALVSFFGCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLG 388
Query: 448 Q----------QGWNKVDMDVKQQVQERFQCC---GFQDSTFTNTTADHPSCAVVNAICC 588
+ + + D +Q++ +CC GF+D + T + S +V CC
Sbjct: 389 KDMNDTIVSYGEKGKEGITDAYDAIQKKEKCCGINGFKDWQRSYYTKGNHS--IVPDSCC 446
Query: 589 KGIN 600
K ++
Sbjct: 447 KTVS 450
>SB_27092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 219 LWASVIPGYQLAHCRWYT-SMWSISHLNLHIGACRSSQASP 338
LW +IP Y C YT S W I H+ S +P
Sbjct: 46 LWTPMIPSYLKGQCHVYTISFWYILWSLCHLQGYTQSTCAP 86
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 538 NTTADHPSCAVVNA-ICCKGINTTNCQCEP 624
N D P+ A N +C G+NT +C+C P
Sbjct: 488 NDPNDCPANACQNGGVCIDGMNTYSCKCHP 517
>SB_59720| Best HMM Match : GARS_N (HMM E-Value=9.24857e-44)
Length = 200
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 161 KAFFEQVKPPHILKASNNFVIKKILIL 81
KAF E PP++LKA K +LIL
Sbjct: 136 KAFLETFNPPYVLKADGLAAGKGVLIL 162
>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
Length = 416
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 556 PSCAVVNAICCKGINTTNCQCEPCME 633
P C + +C G T+NC CE C +
Sbjct: 120 PCCNEITGLCGNG--TSNCNCEACTD 143
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 475 PYQLYSIPVEPTSLAARS*LPNKHKQSKTVPKT 377
P++ Y P+ TSL A S LP +Q + P T
Sbjct: 4033 PFEQYECPIYRTSLRASSLLPAASQQISSPPST 4065
>SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Frame = +1
Query: 412 LAVNSEQQEMLAQQGWNKVDMDVKQQV--QERFQCCGFQDSTFTNTTADHPSC---AVVN 576
L ++EQ LAQ GW KV +K ++R T D C V N
Sbjct: 229 LPKDNEQGNKLAQSGWRKVRESLKAITGREKRKDIAHMSMLELTKLFEDIRECRYLRVGN 288
Query: 577 AICCKG--INTTNCQCEPC 627
+G +NT C+C C
Sbjct: 289 HTSYRGDSVNTKQCKCIAC 307
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 27.5 bits (58), Expect = 9.6
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Frame = +1
Query: 118 AFKMCGGFTCSKNALIALNILYVVVASILISVTVYGQASSLVTNLPIVGGILACGVFXXX 297
AF +C GF + I ++ V IL+ + S+L +L +V I F
Sbjct: 57 AFSICNGFLWLTSLGITTFGIFSFVMEILVRLENRLSNSTLAISLTVV--IFGAASFILC 114
Query: 298 XXXXXXXXXVKHHQVMLFFYMV-ILFLLFLVQFSIACACLAVNSEQQEMLAQQGW--NKV 468
+K + +++ I F + ++ F I + V ++ +E++ + N
Sbjct: 115 TLGCSRKPSIKQLRFYRSSFVIFITFEIIVMVFGIIQSS-RVPTDTREIVNWSVFILNYQ 173
Query: 469 DMDVKQQ---VQERFQCCGFQD------STFTNTTADHPSCAVVNAICCK-GINTTNC 612
D ++ +Q+ +CCGF+D + + + ++ S V A CCK I+ + C
Sbjct: 174 DDSIRDDLDSIQKNLKCCGFKDYNDWELNPYYSCKSNGYSRCSVPASCCKLDISGSRC 231
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +1
Query: 508 CCGFQDSTFTNTTADH-PSCAVVNAICCKGINTTNCQC 618
C + TF D P+ N C GIN CQC
Sbjct: 681 CLSGFNGTFCEVNIDDCPAIGCNNGTCIDGINNYTCQC 718
>SB_58952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 556 PSCAVVNAICCKGINTTNCQCEPCME 633
P C V +C GI NC CE C +
Sbjct: 48 PCCNEVTGMC--GIGKANCTCESCTD 71
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 490 VQERFQCCG------FQDSTFTNTTADHPSCAVVNAICCKGINTTNCQC 618
+Q RF+CCG +Q + + + ++ P+ V CCK N QC
Sbjct: 157 IQTRFKCCGIESYKDWQANRYFSCSSPVPTACGVPFSCCKKSIQGNRQC 205
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 472 MDVKQQVQERFQCCGFQDSTFTNTTADHPSCA----VVNAICCKGINTTNCQCEP 624
+D+ +++ + C T N + CA + +C G+N+ +C C+P
Sbjct: 184 LDINAGLRDAYNCSCVPGFTGKNCEINIDDCASRPCLNGGLCVDGVNSYSCLCQP 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,406,065
Number of Sequences: 59808
Number of extensions: 416289
Number of successful extensions: 1078
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -