Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a08
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    33   0.13 
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    31   0.91 
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    30   1.2  
AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical...    29   2.1  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    29   2.8  
U50070-3|AAR85909.1|  188|Caenorhabditis elegans Forkhead transc...    29   3.7  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   8.4  
AL033536-7|CAA22137.2|  169|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +1

Query: 355 YMVILFLLFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQE---RFQCCGFQD 525
           Y + + +LFL++ +I    L      +  + +  ++  +M+ +  +     R+ CCG ++
Sbjct: 103 YFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSFNMNAQADISAFNFRYNCCGAEN 162

Query: 526 STFTNTTADHPSCA 567
               N  A  P+C+
Sbjct: 163 LPNLNCFAGQPTCS 176


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 496 ERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGINTTNCQC 618
           +R  C G  +   T  TA  PSC   N +C K      CQC
Sbjct: 33  QRLPCRGRNEEYKTCGTACEPSCTNPNPMCTKQCINNVCQC 73


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 264 WYTSMWSISHLNLHIGACRSSQASPSYAVLL 356
           W+ +  + S LN H+   R+S  S SYAVL+
Sbjct: 80  WFQTEGNSSQLNFHMLIARTSSVSSSYAVLM 110


>AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical
           protein K11D12.9 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 494 CTCCFTSISTLFHPC*ANISCCSELTAKQAQAIENCTKNKRNSITM 357
           C C  T  S +F PC   I+C     A   +    C     NSIT+
Sbjct: 353 CICLATKPSIVFMPCRHLITCSGCYDASDFRECPTCRSTIENSITV 398


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 10  LFTHPINS*EYYV*IRLLKFDNPSKISIFLITKLLLAFKMCGGFTCSKNALIALNI 177
           L T P ++  YY     L FD P   S   I+ L   ++    +T S+ ++I LN+
Sbjct: 483 LMTFPADTKNYYSLRSTLVFDGPGLSSGCYISNLYQLYQTTNQWTSSQKSIIVLNL 538


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -3

Query: 500  RSCTCCFTSISTLFHPC*ANISCCSEL--TAKQAQAIENC-TKNKRNSITM*KNSITW*C 330
            R C CC   +ST   PC   I C   L  T++ + +I +C T N  ++ TM   ++T   
Sbjct: 2655 RKCICCGFDLSTFGGPC---IQCPRGLTTTSQASTSINSCDTINCIDANTMINKNVT--- 2708

Query: 329  LTAPASPNMEI 297
               P++P  EI
Sbjct: 2709 -VGPSTPYSEI 2718


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 162 DRVEHSLRGCSKHLDFSHSLWASVIPGYQLAHCR 263
           D  E    GCS  L+ +HS +  ++ G +  HCR
Sbjct: 110 DLYEKITSGCSFSLEEAHSYFKQLVNGLKFLHCR 143


>U50070-3|AAR85909.1|  188|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 7, isoform c protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 90  YFLNYKVIASFQNVWRFHL-FEECFDRVEHSLRGCSKHLDFS 212
           Y  N K +  FQN  R +L   +CF RVE +++G    +D S
Sbjct: 7   YNNNMKQLIFFQNAVRHNLSLHKCFQRVEQNVKGAVWTVDDS 48


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 524  SWKPQHWKRSCTCCFTSISTLFHPC 450
            SWKP HW      C + I T    C
Sbjct: 1298 SWKPSHWSPCSVTCGSGIQTRSVSC 1322


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 524  SWKPQHWKRSCTCCFTSISTLFHPC 450
            SWKP HW      C + I T    C
Sbjct: 1298 SWKPSHWSPCSVTCGSGIQTRSVSC 1322


>AL033536-7|CAA22137.2|  169|Caenorhabditis elegans Hypothetical
           protein Y53C10A.3 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 144 LFEECFDRVEHSLRGCSKHLDFSH 215
           LF   F ++ H   GC  HL+FSH
Sbjct: 92  LFMCGFGKITHVSHGCHVHLEFSH 115


>AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical
           protein K01A2.9 protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 611 QFVVLMPLQHIALTTAHDG*SAVVFVNVESWKPQHWKRSCTCCFTSISTLFH 456
           +F  + PL HIAL+TA+   + +V   +  WK        + C T++S   H
Sbjct: 90  RFFHIWPLVHIALSTAYQLFTQIV---ISHWKTYQIPILYSSCATTVSVGIH 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,099,250
Number of Sequences: 27780
Number of extensions: 319543
Number of successful extensions: 1020
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)