Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a08
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    30   0.016
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 12/165 (7%)
 Frame = +1

Query: 154 NALIALNILYVVVASILISVTVYGQASSLVTNL--PIVGGILACGVFXXXXXXXXXXXXV 327
           N + A+  L ++   +LI + + G +  + T L  P +  I+   +              
Sbjct: 16  NFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIFVISFFGCCGAIR 75

Query: 328 KHHQVMLFFYMVILFLLFLVQFSIACACLAV----------NSEQQEMLAQQGWNKVDMD 477
           + H + + F   +LF+L LVQ ++A     V          + + QE+      N    D
Sbjct: 76  ESHCMTITFASFLLFIL-LVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKD 134

Query: 478 VKQQVQERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGINTTNC 612
               +Q+  QCCG    +  N   D P    + A CC       C
Sbjct: 135 FIDFIQKNLQCCGVHSLSDYN---DKP----IPASCCNSPENNTC 172


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 487 QVQERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGI 597
           + +  F C    ++   + T DHPS A +     KGI
Sbjct: 188 EAEAEFVCIATPEAIELHFTTDHPSVAYLLVGSLKGI 224


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  LNYKVIASFQNVWRFHLFEECFDRVEHSLRG 188
           +NY +   F ++ RF  F    D+V  S RG
Sbjct: 19  INYFIFLYFNSLVRFRRFTIELDKVLESPRG 49


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 264 WYTSMWSISHLN 299
           W T MW+ SHL+
Sbjct: 94  WMTLMWTDSHLS 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,918
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)