Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a08
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    32   0.36 
At4g03000.2 68417.m00408 expressed protein contains similarity t...    29   2.6  
At4g03000.1 68417.m00407 expressed protein contains similarity t...    29   2.6  
At5g25770.2 68418.m03059 expressed protein                             28   4.5  
At5g25770.1 68418.m03058 expressed protein                             28   4.5  
At3g06100.1 68416.m00700 major intrinsic family protein / MIP fa...    27   7.8  

>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 173 FNAIKAFFEQVKPPHILKASNNFVIKKILILLGLSNFNNL 54
           +++IK  +E VK   ILK +N     K+  LLGLSN  NL
Sbjct: 687 YSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNL 726


>At4g03000.2 68417.m00408 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 590 LQHIALTTAHDG*SAVVFVNVESWKPQ-HWKRSCTCCFTS-ISTLFHPC*ANISC--CSE 423
           + H   T A+   SA V+ N +  + +   +R C  C +  +S +F PC   + C  C++
Sbjct: 727 MNHTTNTKANSMASAKVWENNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKCNQ 786

Query: 422 LTAKQAQAIENC 387
           L  K  +A+E+C
Sbjct: 787 LHEK--EAMEDC 796


>At4g03000.1 68417.m00407 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 590 LQHIALTTAHDG*SAVVFVNVESWKPQ-HWKRSCTCCFTS-ISTLFHPC*ANISC--CSE 423
           + H   T A+   SA V+ N +  + +   +R C  C +  +S +F PC   + C  C++
Sbjct: 727 MNHTTNTKANSMASAKVWENNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKCNQ 786

Query: 422 LTAKQAQAIENC 387
           L  K  +A+E+C
Sbjct: 787 LHEK--EAMEDC 796


>At5g25770.2 68418.m03059 expressed protein
          Length = 418

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 315 CRSSQASPSYAVLLHGNTIPFVFGTVFDCLCL 410
           C+++      +   +GNT+PF+F TV+D + L
Sbjct: 201 CKTAYRDALISSWRNGNTMPFIFDTVWDLIKL 232


>At5g25770.1 68418.m03058 expressed protein
          Length = 360

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 315 CRSSQASPSYAVLLHGNTIPFVFGTVFDCLCL 410
           C+++      +   +GNT+PF+F TV+D + L
Sbjct: 143 CKTAYRDALISSWRNGNTMPFIFDTVWDLIKL 174


>At3g06100.1 68416.m00700 major intrinsic family protein / MIP
           family protein contains Pfam profile: PF00230 major
           intrinsic protein; contains non-consensus TT acceptor
           splice site at exon 4
          Length = 275

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 109 LLLAFKMCGGFTCSKNALIALNILYVVVASILISVTVYGQASSLVTNLPIVGGILA 276
           + +AF + GGF  S+  L          A+ L+ V+VYG  + ++   P +  + A
Sbjct: 108 ITIAFAVFGGFPWSQVPLYITAQTLGATAATLVGVSVYGVNADIMATKPALSCVSA 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,233
Number of Sequences: 28952
Number of extensions: 284805
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)