Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10a05
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 152 4e-38
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 146 1e-36
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 2.4
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 4.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.3
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 7.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.3
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 152 bits (368), Expect = 4e-38
Identities = 81/156 (51%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Frame = +1
Query: 58 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 237
ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 238 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 417
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ RS+ +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116
Query: 418 AYRRTPAAPGVAPHDKKAD-VGPGSADLEFKGGYGR 522
YRR +KK D PG F+GG+GR
Sbjct: 117 GYRRA---------EKKDDGAAPGGFAPSFRGGFGR 143
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 146 bits (355), Expect = 1e-36
Identities = 78/155 (50%), Positives = 101/155 (65%)
Frame = +1
Query: 58 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 237
ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 238 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 417
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R++ D +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115
Query: 418 AYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 522
YRR K P F+GG+GR
Sbjct: 116 GYRRA--------EKKDEGAAPSGFAPSFRGGFGR 142
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 8 NPLALFCVKLAYRRLSRC*CPNKTVLLFMSTSLKRESWW 124
NP+ F +K+ R + N+ ++ +S+S+K+ S W
Sbjct: 81 NPVISFNIKIPSRTANAIQQSNRVIVHLLSSSIKKHSEW 119
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 416 DLSSAERAGASGRPTGPRRT 357
DLSSAER A GRP + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 140 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 232
+H + L+ RFL + L ++C H+ +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 382 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 495
P+A S+ +Y + A+ P +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 338 RLSVAGTISGGRCKNILKY 282
R+ G+++GG CK LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 310 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 417
P I P ++ V TVR G PD P+ S R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,692
Number of Sequences: 5004
Number of extensions: 41703
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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