Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10a03
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 48 6e-06
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 46 4e-05
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 46 4e-05
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_35182| Best HMM Match : CUB (HMM E-Value=0) 40 0.002
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 39 0.003
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.006
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.075
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 34 0.100
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 34 0.100
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 33 0.30
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 33 0.30
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.93
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.2
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 30 1.6
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 30 1.6
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 29 4.9
SB_29023| Best HMM Match : Pentaxin (HMM E-Value=2.9e-11) 28 6.5
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 8.6
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 48.4 bits (110), Expect = 6e-06
Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 8/192 (4%)
Frame = +2
Query: 146 EVFLPILNQWFQQCAGIVLTNYHYLSTATCF--HGEFYDPAYRRIIAGSSRRSE------ 301
E+ L N C G ++ Y L+++ CF + R+ RR E
Sbjct: 2 EIILKTPNLTTHYCGGSLIDPYWILTSSHCFWTYNNISTQFEIRLGEHDERRIEGYEEII 61
Query: 302 PGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDL 481
G+ Y+H + + D DV+++++ F +
Sbjct: 62 QGDQLYIHPGLVVGDLISPG-DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFV 120
Query: 482 LGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDN 661
GWG T +G S L++LE+ + +KE C ++ + D FCAG + GGRD
Sbjct: 121 TGWGKTAEGSPYSP-VLNELEVDIVSKEVCNAN-DSYNGTINDRYFCAGFPQ-GGRDSCG 177
Query: 662 TDLGAPAFFQNA 697
D G P NA
Sbjct: 178 GDSGGPLVCSNA 189
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
Frame = +2
Query: 338 HPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXX---DLLGWGTTVQG 508
HP +S ++YD D++++R+ + F + GWG
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTFTDYVKPICLPSAASDYAQLQANVSGTISGWGKRKLW 258
Query: 509 GSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFF 688
LH+ + + + + CR+ + D +VT N FCAG + D D G P
Sbjct: 259 RDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDSGGPFSV 316
Query: 689 QNAL 700
N L
Sbjct: 317 DNPL 320
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/120 (22%), Positives = 49/120 (40%)
Frame = +2
Query: 320 VHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTT 499
V + HPE+ + D++++ ++ + F + GWG+T
Sbjct: 154 VSHVIEHPEYDDRKIKNDIALLELSRPVKFDREGKVGTACLTNQQPTPGKRCYITGWGST 213
Query: 500 VQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAP 679
+ G+ S L + L + + +C+ +Y G V + CAG R+G N D G P
Sbjct: 214 IGTGN-SPRILQQAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSGGP 269
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 43.6 bits (98), Expect = 2e-04
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 5/183 (2%)
Frame = +2
Query: 161 ILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAV-- 334
I N Q C G ++T ++ A C + +PA ++ G+ R+ P + ++
Sbjct: 649 IYNSGRQFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRS 706
Query: 335 --NHPEF-SEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQ 505
NHP++ S + D++++R++ + GWGT
Sbjct: 707 IHNHPDYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSS 766
Query: 506 GGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAF 685
GGS + L++ + + + C Y G ++ + CAG GG D D G P
Sbjct: 767 GGSQPEA-LNQAVVPLRTRSECERSYPGK---ISADMICAGNPE-GGVDTCQGDSGGPLV 821
Query: 686 FQN 694
Q+
Sbjct: 822 CQH 824
>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
Length = 963
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 485 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 664
GWG +G + L + ++ + +++ C Q DR +T+N CAG+ R GG D
Sbjct: 351 GWGALQEGAGSTSKVLMQAKVPLVSRDQCSHQQSYGDR-ITENMLCAGM-RQGGVDSCQG 408
Query: 665 DLGAP 679
D G P
Sbjct: 409 DSGGP 413
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG---EISYVHFAVNHPEFSE 355
C G V++ + L+ A C E + ++ G R ++ V ++H +S
Sbjct: 574 CGGNVISPWWVLTAAHCVQDE--RASNIKLTMGEWRLFNVDGTEQVIPVERIISHANYSY 631
Query: 356 ENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLH 535
D D +++++T ++F + GWG+T GS S L
Sbjct: 632 NTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRGSPSPNYLQ 689
Query: 536 KLELIVTNKENCREQYKGHDRVVTDNKFCAG 628
++ L + N C Y R +T CAG
Sbjct: 690 EVGLPLVNHSQCHATYLTASRKITPRMRCAG 720
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 39.5 bits (88), Expect = 0.003
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Frame = +2
Query: 335 NHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXD--LLGWGTTVQG 508
+HP FS YD D++++R+ + +LGWG T
Sbjct: 1249 SHPRFSWRTYDSDIALIRLRWKANITEYVRPVCLPNGYQRRLVKPRAKGVMLGWGVTEN- 1307
Query: 509 GSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFF 688
L + + V N C++ Y+ VT N CAG + RD N D G F
Sbjct: 1308 -KRPSKTLKEAIVPVVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVF 1365
Query: 689 QNA 697
++
Sbjct: 1366 YDS 1368
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 39.1 bits (87), Expect = 0.003
Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 3/168 (1%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFS-E 355
C G V+ ++ A CF Y + + G + V + HP+++
Sbjct: 135 CGGSVVAPEWIVTAAHCFAYSKDAKDYTIAVGEHDLNATDGYEQRPDVERIILHPKYAPH 194
Query: 356 ENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLH 535
N+D DV+++++ + + + GWG + G LH
Sbjct: 195 NNHDYDVALIKLASPLQYNDRVRPVCLPSLKEDLEENTQCYISGWGHLQEAGH-GPWVLH 253
Query: 536 KLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAP 679
+ + + +++ C++ Y V+ CAG AGG D D G P
Sbjct: 254 QAAVPLVSRDTCQKAYNDLHYKVSSRMRCAG-YGAGGIDACQGDSGGP 300
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/99 (23%), Positives = 39/99 (39%)
Frame = +2
Query: 332 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 511
++H +S D D +++++T ++F + GWG+T G
Sbjct: 375 ISHANYSYNTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRG 432
Query: 512 SVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAG 628
S S L ++ L + N C Y R +T CAG
Sbjct: 433 SPSPNYLQEVGLPLVNHSQCHATYLTASRKITPRMRCAG 471
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 38.3 bits (85), Expect = 0.006
Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 8/176 (4%)
Frame = +2
Query: 176 FQQCAGIVLTNYHYLSTATCFH-----GEFYDPAYRRIIAGSSRRSEPGEISY---VHFA 331
F C G ++++ ++ A H G +P ++ G+ ++ + +
Sbjct: 452 FHTCGGSLISDRWVVTAAQGIHRNKNPGGRQNPGGYTVVVGAHKKRGSTSVQQSLRLSQI 511
Query: 332 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 511
+ HP++++ D++++ + + F + GWG
Sbjct: 512 IEHPKYNDRRIVNDIALLELATPVQFDSAGKVGTVCLTDQRPAPGKRCYITGWGAINGDT 571
Query: 512 SVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAP 679
S L + L + + ENCR +Y V + CAG R+ N D G P
Sbjct: 572 QQSPDILQQAMLPIASHENCRRKY---GDVSSTAHLCAGEARSDAAGGCNGDSGGP 624
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 176 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA--VNHPEF 349
F C G ++++ ++ A C H Y ++ +R + + + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188
Query: 350 SEENYDKDVSIVRVTHAIHF 409
++ D++++ + + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 34.7 bits (76), Expect = 0.075
Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 5/154 (3%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA---VNHPEFSE 355
C G +++ ++ A C G + P+Y +++ G R+ P H + HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151
Query: 356 ENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLH 535
D++++ ++ + + GWG G S L
Sbjct: 152 PQLSNDIALIELSSPVPLSDRGHQVSVGSKCF---------ITGWGKIRHPGG-SHHILQ 201
Query: 536 KLELIVTNKENCRE--QYKGHDRVVTDNKFCAGL 631
+ + +++ C++ Q G +TD+ CAG+
Sbjct: 202 QAMMPPLSQDACKKKVQQAGFGIQITDSMVCAGV 235
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 34.3 bits (75), Expect = 0.100
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 479 LLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYD 658
+ GWGT GG+ L + + + ++ C Y + D+ CAGL AGG D
Sbjct: 78 ITGWGTLASGGN-QPNKLMQASVPLVSQSKCNTAYPNK---IHDSMLCAGL-DAGGIDAC 132
Query: 659 NTDLGAP 679
D G P
Sbjct: 133 QGDSGGP 139
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 34.3 bits (75), Expect = 0.100
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 479 LLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYD 658
+ GWGT GG+ L + + + ++ C Y + D+ CAGL AGG D
Sbjct: 422 ITGWGTLASGGN-QPNKLMQASVPLVSQSKCNTAYPNK---IHDSMLCAGL-DAGGIDAC 476
Query: 659 NTDLGAP 679
D G P
Sbjct: 477 QGDSGGP 483
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 32.7 bits (71), Expect = 0.30
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 2/161 (1%)
Frame = +2
Query: 185 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSE-PGEISY-VHFAVNHPEFSEE 358
C G ++ ++ A C Y ++ R P + ++ + H +FS
Sbjct: 57 CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMR 116
Query: 359 NYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLHK 538
+ D++++++ + + GWG TV GGS + G L +
Sbjct: 117 HLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSAA-GILQQ 175
Query: 539 LELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDN 661
L V +C+ V + + CAG GG D+
Sbjct: 176 AMLPVAGDSDCQRTNGRLVPVDSRSMICAGGQGKGGCQGDS 216
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 340 MVNSK-VNIRYFTGLTATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 176
M+NS+ +N FTG TGR AT +V+ +E GS ++V+ + + +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 146 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRSEPGEIS 316
E F+ + W QC+G ++ H ++ A C H G+++ I+ G S S E+
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197
Query: 317 YVHFAV 334
Y FAV
Sbjct: 198 Y--FAV 201
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 31.1 bits (67), Expect = 0.93
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +2
Query: 479 LLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRV--------VTDNKFCAGLV 634
+ GWG + G ++ L + +L V + C E++ G + VT+ CAG
Sbjct: 158 ITGWGRSYYPGPTAN-KLQQADLRVVSNRACSERHMGSKNMRLENGTWRVTETMLCAGDA 216
Query: 635 RAGGRDYDNTDLGAPAFFQN 694
G++ N D G P +N
Sbjct: 217 GKTGKNGCNGDSGGPFVCRN 236
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 31.1 bits (67), Expect = 0.93
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 146 EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRSEPGEIS 316
+V L + Q+C G ++ L+ A CF F P + G S RR G+
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311
Query: 317 YVHFAVNHPEFSEENYDKDVSIVRVTHAIHF 409
+ HP+++ +++ D++++++ F
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 683 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 594
RQG P +YCRS Q GP RR R Y +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 704 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 576
L+ H G R +PS+ C + P +++ YQS+ HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 479 LLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGG 646
++GWG TV GG ++ L + L V +C ++ RV + CAG RA G
Sbjct: 92 VVGWGRTVGGGQGAE-ILQQAMLPVAYDNHCMQRNNQLMRVDPVSMICAGGQRAAG 146
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/140 (19%), Positives = 48/140 (34%)
Frame = +2
Query: 260 AYRRIIAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXX 439
A+RR+ SS +E ++ V H FS Y D++++++
Sbjct: 2 AHRRL---SSNTAE--QVIKVKRIFKHSGFSMWRYRDDIALLQLERPAQLNDRVNVACLP 56
Query: 440 XXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKF 619
L GWG V L + + + + E+C+ +Y + +
Sbjct: 57 SPGDVPPVGSKCWLTGWGRQVDSSGPLPDILQQARIPIASHEDCKRKY--GSGIYSYTHL 114
Query: 620 CAGLVRAGGRDYDNTDLGAP 679
CAG + D G P
Sbjct: 115 CAGEAKPNAAGACQGDSGGP 134
>SB_29023| Best HMM Match : Pentaxin (HMM E-Value=2.9e-11)
Length = 204
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +2
Query: 515 VSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDY----DNTDLGAPA 682
++D H + +N E + Y + V + G +GG + + DLG
Sbjct: 78 IADSRFHSVVATWSNSEGEFQFYVDNSLVTKEKNLATGRTISGGGVFIIGNEQDDLGGGF 137
Query: 683 FFQNALVGIV 712
F NALVG +
Sbjct: 138 SFGNALVGTI 147
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 131 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 253
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 535 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 359
+++ V Y AA+ S Q N+N L Y + D + A + M SY+ + +
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362
Query: 358 LLREFGMVNSK 326
L + G++N +
Sbjct: 363 LAKNRGLINGE 373
>SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = -3
Query: 592 MTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVW 413
M +VLF A+F + EF ++ + + T + +GS + +N Y D +D T+L
Sbjct: 1 MAVVLF-ALFRL--LEFLMLVIFTKGTCSNSGSQQALHVNITCEKYLDVYVDGETMLTGV 57
Query: 412 AEVDGMCYSYDAHILVV 362
V + +H++ V
Sbjct: 58 QGVHSILIDSSSHVMAV 74
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 201 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLLTIPNSL 353
SP+T+ Q++P + + L T + S +LPV + FT IP +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,813,841
Number of Sequences: 59808
Number of extensions: 588789
Number of successful extensions: 1456
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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