Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a01
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    28   1.3  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   2.3  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    26   5.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   7.2  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   9.5  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 338 PWSRFEYVHLPKMVTKYSMY--DQEAQCHRVR*AECHWFDSR 457
           PW +    +L +    Y +Y  DQE QC      +C   D R
Sbjct: 820 PWGKDPKTNLSRRYINYKVYNYDQEGQCQSYHYEDCQIMDVR 861



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 506  WDLEQTNLFVKQIFDRNGNQTNDTR 432
            WD  Q N FV Q+FD   N     R
Sbjct: 1049 WDERQNNKFVGQVFDEFKNIETSAR 1073


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 506 WDLEQTNLFVKQIFDRNGNQTNDTRLN-VLCGTALLGHTLNT 384
           W+L++   F+  +F    N+ NDT  N V+  T  L +   T
Sbjct: 577 WNLQKNMEFISSVFSLIKNEVNDTSANSVILRTDALSNVATT 618


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 329 KVGPWSRFEYVHLPKMVTKYSMYDQEAQCHRVR 427
           K+ P S FE+ ++ +++ KY   D E+    V+
Sbjct: 155 KMLPLSAFEHAYIQRLINKYGTEDFESMAKDVK 187


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 246 AMKPIDSNNHTAIMGRELICPSKATKTPVNSNQS 145
           +MKP +++NHT  +G     P+ + K  V S  S
Sbjct: 403 SMKPSNASNHTVSLGYLNDRPNHSKKNSVTSTSS 436


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 5  LFDYCYYKKDARSIWK*NGVRIVSIKY 85
          LFD C+ ++D  S+ K N    VSI Y
Sbjct: 10 LFDVCFKQEDVDSLKKPNWFTDVSIDY 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,325
Number of Sequences: 5004
Number of extensions: 54792
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)