Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a01
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar t...    29   2.7  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    28   4.7  

>At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar to
           L-ascorbate oxidase from {Nicotiana tabacum} SP|Q40588,
           {Cucurbita pepo var. melopepo} SP|P37064; contains Pfam
           profile PF00394: Multicopper oxidase; supported by cDNA
           gi_15215753_gb_AY050406.1_; A false intron was added
           between exons 4 and 5 to circumvent the single
           nucleotide insertion in this BAC which, otherwise,
           causes a frameshift.
          Length = 571

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 352 KSRPRSYFLWYDAIMPPVLNNTT 284
           KS PRSY + YD + PP   NTT
Sbjct: 410 KSPPRSYRMDYDIMNPPPFPNTT 432


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 337 SYFLWYDAIMPPVLNNTTAIIPIEFKPNISRY 242
           ++ LW  AI  P LNN T +   ++KP +S Y
Sbjct: 306 NHTLWTLAIQHPNLNNVTQVFSFDYKP-VSPY 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,712
Number of Sequences: 28952
Number of extensions: 266511
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)