Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--1000
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    29   3.4  
12_01_0861 + 8153108-8153266,8154633-8155136                           28   4.6  
09_01_0019 + 403078-404211                                             28   4.6  
05_05_0048 + 21884078-21884951,21885586-21885899                       28   4.6  
08_01_1002 + 10171942-10172859,10173369-10173452                       28   6.0  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   8.0  

>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = -2

Query: 481 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKD 302
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL-- 63

Query: 301 ASPVLDHAICKSYPDSSKLTTSDARP 224
              + D A   S+ D++    S   P
Sbjct: 64  --ALFDLAPSPSHHDAAAAAASPGAP 87


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 481 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 341
           SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 99  SSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 372 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSD 479
           G S  DSG GA ++A   K  SRR  +      GSD
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSD 356


>05_05_0048 + 21884078-21884951,21885586-21885899
          Length = 395

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = +3

Query: 387 DSGEGA*ETATTSKEG---SRRANYPLPARGGSDEK*RYRTLTRPRNR--NEYTLNI--L 545
           + G GA  + TT  EG    RRA  P P  G SD++   R L   R R   +Y   I   
Sbjct: 120 NGGAGASTSQTTGLEGVEVMRRAAAPAPDNGSSDKEEAARPLIGVRKRPWGKYAAEIRDS 179

Query: 546 TRNNWR 563
           TRN  R
Sbjct: 180 TRNGAR 185


>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +1

Query: 223 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 387
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 388 IPEREPEK 411
           + +RE  K
Sbjct: 302 VRDRENRK 309


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 433 PSLDVVAVSQAPSPESNPDSPLP 365
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,986
Number of Sequences: 37544
Number of extensions: 354914
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)