Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0998
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.5  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.0  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   7.9  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 644  LAQILPQLQETTKPPFPSVG*SGISGYVYTVTSRGARTAAWAA 516
            L  +LP++ + T  P P +  S IS  +Y   + G+R   + A
Sbjct: 1716 LEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLA 1758


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 452 NITYLLS*IYCFQEI-SFMSY*L-YSKVFFLQVLVLE*SKHNKSTFLTCRNV 303
           N TY  S +   +++ SF+S  L YSKVFFL +L    S  N    L   N+
Sbjct: 170 NTTYTNSDLPASKQLESFISMNLSYSKVFFLHLLQHSDSSFNDKFLLLLANI 221


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 97   IVMFKWCYKINNLT 138
            ++++KWC  INNLT
Sbjct: 973  LLVYKWCQGINNLT 986


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 42  KYIILYKYHIFLCLDIVLYCHV 107
           K + LY Y +F+ LD++  C+V
Sbjct: 261 KAVRLYAYQMFMALDLLKQCNV 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,068
Number of Sequences: 5004
Number of extensions: 54779
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)