Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0997
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    27   3.1  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   7.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -1

Query: 56  VWIACNFYWSLFYL 15
           +W++C+FY+S+ YL
Sbjct: 265 LWLSCHFYYSIIYL 278


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 104 IWETALKLFY*RRTWSVWIACNFYWSLFYLY 12
           IW+  L  F+   TW  W    F++ +FY +
Sbjct: 136 IWQITL-FFFLEDTWHYWAHRLFHYGIFYRF 165


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 788 PKLDKSVQPFSSFRETNEQQFHFYILYRLCPLRNTNT*SHFRHFHRYNKIQSKI 627
           P  D     F     T+      +   RL P  N    SH++ F+RY  I S +
Sbjct: 111 PYTDIRYNGFPEPSNTDSTSILSFNTIRLIPSTNVINTSHYKGFNRYPTISSTV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,086
Number of Sequences: 5004
Number of extensions: 53159
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)