Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0994
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6494| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)                    28   6.1  
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)             28   6.1  

>SB_6494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 449 IYGSIFVQRGVCSFFFNSLMYKS-KKKTLILD 541
           ++G IFV  G+  F+F  L+Y + +KKT  LD
Sbjct: 49  VFGGIFVFLGILVFWFAGLVYMTEEKKTFELD 80


>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
          Length = 711

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 190 IKNIYLIISCSL*NIIT-----SNVYVCILYYSLIVFLCLSLYGC 309
           I +I +II+CS+ NII      +N+ V I  + +I  +C+ +  C
Sbjct: 256 ITSIIIIITCSIINIIVVVIIITNITVIIAIFFIITNICIIIITC 300


>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/47 (19%), Positives = 25/47 (53%)
 Frame = +1

Query: 184 CIIKNIYLIISCSL*NIITSNVYVCILYYSLIVFLCLSLYGCTYIHC 324
           C + + +  ++C   N++ S+ Y C   ++ ++  C++    ++ HC
Sbjct: 2   CYVSHSHYCVTCHSRNVV-SHPYCCSTRHTRLIVTCITRINMSHSHC 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,723
Number of Sequences: 59808
Number of extensions: 315988
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)