Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0994
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.22 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.67 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 428  SNNVKQKI-YGSIFVQRGVCSFFFNSLMYKSKKKTLILDCPVPKYNLSKQLGPTKQKRWN 604
            S NV+ ++ + + F  R   S   ++L   +  K + LD   PK N+  ++ P K +  +
Sbjct: 973  SKNVQGRVGFVTPFEHRHFISGIDSNLHVYAPLK-ISLDVNTPKGNMQWKIWPMKGEEKS 1031

Query: 605  RHFFYSVQYSVHPHQM 652
            R F YSV   V  H +
Sbjct: 1032 RLFHYSVVPFVSNHDI 1047


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 31  YRKET-TGFVNFYLIQFDLVTESLFKRFQPYYTIF 132
           YR++T    +N Y ++F LVT+ +F   +P Y ++
Sbjct: 49  YRQDTKNNLLNAY-VRFKLVTDCIFVTSEPGYFLY 82


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 156 VSSNFSLFKNCIIWLEPFKKGLCY 85
           VSS+ S +  CI+ L  + +  CY
Sbjct: 195 VSSSISFYVPCIVMLGIYCRLYCY 218


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 144 FSLFKNCIIWL 112
           F+++  CIIWL
Sbjct: 710 FTMYTTCIIWL 720


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 144 FSLFKNCIIWL 112
           F+++  CIIWL
Sbjct: 800 FTMYTTCIIWL 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,288
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)