Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0992
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.1  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.5  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   4.3  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    26   4.3  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   5.7  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   10.0 
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   10.0 

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +1

Query: 82  EEDLLELRSQAGSLA-ESVESLGPAPKN--KAPENPHQQHASPTKTK 213
           E+  +E RS+   +  +S+ES+G   +   K P+NPH++H  P + +
Sbjct: 128 EKSQVEGRSELSQVENDSLESIGNYDRVEFKRPKNPHEKHFRPLRQR 174


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 43  FKKELATSTSTLAEEDLLELRSQAGSLAESVESLGPAPKNKAPENPHQQHASPTKTKPNH 222
           F + +   T+ L  +D   ++ QA + AES  +  P  K    E P + H      +  +
Sbjct: 339 FLQVIREKTALLMNQDSNSVQPQALAAAESPTTKAPTTKAPTSEAPPKGHVKQLAKQLGN 398

Query: 223 SFLPK 237
            ++P+
Sbjct: 399 IYMPQ 403


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 88  DLLELRSQAGSLAESVESLGPAP 156
           D+ E RSQ+  L++S +++GP P
Sbjct: 2   DIRESRSQSPELSQSEDAVGPCP 24


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 25  SIALLGFKKELATSTSTLAEEDLLELRSQAGSLAESVESLGPAPKNKA 168
           +I L+G K+ L  ST++  + DL+   S   S   S E+       KA
Sbjct: 419 NIGLIGVKRSLHDSTTSHNKSDLMRTNSDPQSAMRSRENYDATVDKKA 466


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 302 YALCLFQIFTRVTLSCTERTYSIRISVA 385
           YA+CL  IF R + +C +  YS+ +SVA
Sbjct: 74  YAVCLMNIFFRNSENCFK--YSMNLSVA 99


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 347 CTERTYSIRISVA--RQ*CKG*CSCSNLIEAWTTCLIRR 457
           C  R  S+   VA   Q CKG  S  +L +AW  CL +R
Sbjct: 473 CVARLRSVCNFVAFLHQICKGVWSSCSLEKAWDECLKKR 511


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 379 RNPYTVSTFSTTKSYTG 329
           R PY+++ FS+TK Y+G
Sbjct: 552 RMPYSINGFSSTKLYSG 568


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 61  TSTSTLAEEDLLELRSQAGSLAESVESLGPAPKNKAPENPHQQHASPTK 207
           +S ST+++ED+     + G+L+ +     P+    +  +P Q    PTK
Sbjct: 198 SSKSTISDEDVAWQLIRLGALSSNSVKSSPSKSFVSISSPVQSTVKPTK 246


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 105 IASGQLGGVSGEPRSGSEEQSTRESPPAARVSNENK--TESFLPPETI*IARNELLVANV 278
           + S   G      ++    Q   E PP  R + ENK  T+S LP +     +N  +   V
Sbjct: 138 VKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSALPKKEASKKKNPKVKGPV 197

Query: 279 NVK 287
           +V+
Sbjct: 198 DVE 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,693
Number of Sequences: 5004
Number of extensions: 55658
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)