Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0992
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family...    33   0.23 
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family...    33   0.23 
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911...    31   0.70 
At4g02530.1 68417.m00346 chloroplast thylakoid lumen protein SP:...    31   0.93 
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ...    28   5.0  
At1g55500.1 68414.m06349 expressed protein contains Pfam profile...    28   6.6  
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    28   6.6  

>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
           protein
          Length = 438

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 25  SIALLGFKKELATSTSTLAEEDLLELRSQAGSLAESVES--LGPAPKNKAPENPHQQHAS 198
           S+ +L  K+ELA +   LA+  L++  S + S ++  E     P P+ K  EN    H  
Sbjct: 94  SVQILRDKQELADTQKELAKLQLVQKESSSSSHSQHGEDRVATPVPEPKKSENTSDAHNQ 153

Query: 199 PTKTKPNHSFLPKP 240
                  H   P+P
Sbjct: 154 QLALALPHQIAPQP 167


>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
           protein
          Length = 496

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 25  SIALLGFKKELATSTSTLAEEDLLELRSQAGSLAESVES--LGPAPKNKAPENPHQQHAS 198
           S+ +L  K+ELA +   LA+  L++  S + S ++  E     P P+ K  EN    H  
Sbjct: 152 SVQILRDKQELADTQKELAKLQLVQKESSSSSHSQHGEDRVATPVPEPKKSENTSDAHNQ 211

Query: 199 PTKTKPNHSFLPKP 240
                  H   P+P
Sbjct: 212 QLALALPHQIAPQP 225


>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
            Plant protein of unknown function (DUF869)
          Length = 982

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 52   ELATSTSTLAE--EDLLELRSQAGSLAESVESLGPAPKNKAPE-NPHQQHASPTKTKPNH 222
            ELA +   LAE  E +L L  Q  S+    E +  +P  +    NP ++  + T T P  
Sbjct: 867  ELAAAAEKLAECQETILLLGKQLKSMCPQTEQVASSPSQEQQALNPEEEEYA-TSTNPQD 925

Query: 223  SFLPKPSE 246
            S L  PS+
Sbjct: 926  SKLSSPSD 933


>At4g02530.1 68417.m00346 chloroplast thylakoid lumen protein
           SP:022773 ;TL16_ARATH
          Length = 216

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 376 NPYTVSTFSTTK----SYTGEYLEQTQRVSLWYDFTLTLATRSSFRAIQMVSGGR 224
           NP+  +T S++K    +Y+G    QT    LW    L+L   SS  AI +VS  R
Sbjct: 12  NPFFSTTLSSSKKNQIAYSGNSKNQTSSSLLWKRRELSLGFMSSLVAIGLVSNDR 66


>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative similar to elongation factor 1B
           gamma GI:3868758 from [Oryza sativa]
          Length = 413

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 124 AESVESLGPAPKNKAPENPHQQHASPTKTKPNHSFLPKPSELRE 255
           A+  E++ P P  KAP+ P +    P K  P  +  PKP+E  E
Sbjct: 206 AKQTEAVPPVPTKKAPQ-PAKPKEEPKKAAP-VAEAPKPAEEEE 247


>At1g55500.1 68414.m06349 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 549

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 325 YLEQTQRVSLWYDFTLTLATRSSFRAIQMVSGGRNDSVLFSLETRAA---GGDSRVLCSS 155
           Y+    +   +Y +       ++  ++ M SG    +  +S  T  A   GGD ++  + 
Sbjct: 29  YVPNVYQQPYYYGYGSDYTGYTNSESVDMTSGYGYAAFPYSPATSPAPQLGGDGQLYGAQ 88

Query: 154 EPDRGSPLTPPSCPLAISVPTS 89
           +     PLT  S P A SVP S
Sbjct: 89  QYQYPFPLTASSGPFASSVPAS 110


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 22  LSIALLGFKKELATSTSTLAEEDLLELRSQAGSLAESVESLGPAPKN-KAPENPHQQHAS 198
           +S  L+ + KE  TS   ++EE+      + GSL  S  S+G  PK  K  E P   + S
Sbjct: 501 VSEQLIEYHKENITSEEMISEENHQSSAMKDGSLDPSSGSIGNEPKAIKRMEIPVVANVS 560

Query: 199 PTKTK 213
              TK
Sbjct: 561 GALTK 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,678
Number of Sequences: 28952
Number of extensions: 299491
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)